Browse Element(s) Details


Os.29745.1.S2_at

Description gb:AK106370.1
DB_XREF= gi:32991579
TID=Os.29745.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C08, full insert sequence.
FL= gb:AK106370.1 gb:AK109909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1256011/11F-box domain containing protein, expressed
LOC_Os03g045301/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12510OsAffx.22431.1.S1_s_at11/117+7137873..7139079AP2 domain containing protein, expressed
LOC_Os07g12520Os.50233.1.S1_at11/117+7143853..7148040SWIM zinc finger family protein, putative, expressed
LOC_Os07g12530Os.26832.1.S1_at10/117+7151157..7156206ABC1 family protein, expressed
LOC_Os07g12540OsAffx.16228.1.S1_at11/117+7159169..7160548expressed protein
LOC_Os07g12550OsAffx.29680.1.S1_at8/117+7161453..7163595hypothetical protein
LOC_Os07g12560Os.29745.1.S2_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12560Os.29745.1.S1_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12570Os.52501.1.S1_x_at10/117+7166700..7169696expressed protein
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein
LOC_Os07g12590Os.23876.1.S1_at11/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12590OsAffx.16229.1.S1_x_at1/117+7182309..7185281F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29745.1.S2_at--735--2271Chr07:7164387..7164411 (25 bp)
AAATCCAGTTTTCTATCAGTTGCAT
LOC_Os07g12560
Os.29745.1.S2_at--136--6872Chr03:2095954..2095991 (24 bp)
GTTTGTACATTTCACTATGCATGGT
LOC_Os03g04530
Os.29745.1.S2_at--408--1191Chr07:7164301..7164325 (25 bp)
AGTTTGACGCCCATAATCTGATATT
LOC_Os07g12560
Os.29745.1.S2_at--307--6951Chr07:7164268..7164292 (25 bp)
GTAGATAATCCCTCCAGTCTTGAAT
LOC_Os07g12560
Os.29745.1.S2_at--362--10391Chr07:7164188..7164212 (25 bp)
TTTTCCCGTGTTTACAAGACCATGT
LOC_Os07g12560
Os.29745.1.S2_at--221--6931Chr07:7164137..7164161 (25 bp)
GTAGGCTTGTATGAAGACCCTGATA
LOC_Os07g12560
Os.29745.1.S2_at--18--10053Chr06:29187590..29187614 (25 bp)
TAGTATTAGTATTTTTCGTCCGTAT
NONE
Os.29745.1.S2_at--575--10351Chr07:7164029..7164053 (25 bp)
TTTTTTCACTCGTCCGTGTACGATC
LOC_Os07g12560
Os.29745.1.S2_at--356--7891Chr07:7163989..7164013 (25 bp)
GGTTCATTAGTACACGCGAGATCGA
LOC_Os07g12560
Os.29745.1.S2_at--863--6971Chr07:7163942..7163966 (25 bp)
GTACGCGCGTAGAAGCCCAGAACTA
LOC_Os07g12560
Os.29745.1.S2_at--398--1432Chr06:29187746..29187770 (25 bp)
AGAAGCCCAGAACTAATGCACGGAA
NONE
Target Sequence 
AAATCCAGTTTTCTATCAGTTGCATTTACGAAGTATTATAGTTTGTACATTTCACTATGCATGGTAAAAATTAAAATTAA
AATTATAGTTTGACGCCCATAATCTGATATTACCTTTTAGTAGATAATCCCTCCAGTCTTGAATATTTGACATTCCAAAC
ATACATTTGGCCAAACTTTTGAAAGTTTCACCTTTTGTCTTTTCCCGTGTTTACAAGACCATGTTGATTATCCAAATGAC
AAGATATGCAGTAGGCTTGTATGAAGACCCTGATAGAAGATCTTAACTAATTAAAAGATTAGTATTTTTCCAATCGTCAC
CAAAATTAGTATTAGTATTTTTCGTCCGTATGTGCAATTTTTTTCACTCGTCCGTGTACGATCTCCTCCCAAAATTTTGG
TTCATTAGTACACGCGAGATCGAGAGACCGCATCGCTCCCGTCCCGTACGCGCGTAGAAGCCCAGAACTAATGCACGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29745.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis