Browse Element(s) Details


Os.23876.1.S1_at

Description gb:AK072335.1
DB_XREF= gi:32982358
TID=Os.23876.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041E05, full insert sequence.
FL= gb:AK072335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1259011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12540OsAffx.16228.1.S1_at11/117+7159169..7160548expressed protein
LOC_Os07g12550OsAffx.29680.1.S1_at8/117+7161453..7163595hypothetical protein
LOC_Os07g12560Os.29745.1.S2_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12560Os.29745.1.S1_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12570Os.52501.1.S1_x_at10/117+7166700..7169696expressed protein
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein
LOC_Os07g12590Os.23876.1.S1_at11/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12590OsAffx.16229.1.S1_x_at1/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12600Os.52957.1.S1_at11/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12600OsAffx.16229.1.S1_x_at7/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12610Os.50765.1.S1_at11/117+7204847..7207841F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23876.1.S1_at--393--10811Chr07:7182897..7182921 (25 bp)
TTGTATTTCTCCCTTTCTCTACATG
LOC_Os07g12590
Os.23876.1.S1_at--1096--751Chr07:7182875..7182899 (25 bp)
ATGTCACAGTCACTTCTCTGGAGGG
LOC_Os07g12590
Os.23876.1.S1_at--70--9651Chr07:7182804..7182828 (25 bp)
TCAGGGAGAAGTTTCTTGCTCATCT
LOC_Os07g12590
Os.23876.1.S1_at--57--4771Chr07:7182778..7182802 (25 bp)
GCTGCATCTGTTACAAGCCGTCGGA
LOC_Os07g12590
Os.23876.1.S1_at--817--2671Chr07:7182665..7182689 (25 bp)
AAGCGACTGTTGACATGGGCGCCAG
LOC_Os07g12590
Os.23876.1.S1_at--457--3511Chr07:7182652..7182676 (25 bp)
CATGGGCGCCAGTGCTCAAGATGAT
LOC_Os07g12590
Os.23876.1.S1_at--462--731Chr07:7182620..7182644 (25 bp)
ATGTTTGGTCCTTCAGTAACTGTCA
LOC_Os07g12590
Os.23876.1.S1_at--214--1611Chr07:7182577..7182601 (25 bp)
AGCTGCTTAGCTTCTCTAGGAGGTG
LOC_Os07g12590
Os.23876.1.S1_at--548--2951Chr07:7182448..7182472 (25 bp)
AATGGCGACCTGGAGCCTAGTATAT
LOC_Os07g12590
Os.23876.1.S1_at--992--2651Chr07:7182389..7182413 (25 bp)
AAGCCCGCCTCTGAGATCAATCTGT
LOC_Os07g12590
Os.23876.1.S1_at--2--8751Chr07:7182364..7182388 (25 bp)
TGTAAGGATGTTTGTCTCTCGTGAT
LOC_Os07g12590
Target Sequence 
TTGTATTTCTCCCTTTCTCTACATGTCACAGTCACTTCTCTGGAGGGGATAGATTTAAATCATATGCCACTCAATATTAT
GAAACCAATGTTTTCAGGGAGAAGTTTCTTGCTCATCTGGCTGCATCTGTTACAAGCCGTCGGACTGGGAGAGTATGGAT
ATCTGCTTGAATTTTCTCCAGAAAGTTGAAATCAACAATTTGAGTGGAGCAGAGTATGAAATATGTTTTGTGAAGCGACT
GTTGACATGGGCGCCAGTGCTCAAGATGATTACAGTAATGTTTGGTCCTTCAGTAACTGTCAGCGAGGAGGTGTGCCAGG
AGCTGCTTAGCTTCTCTAGGAGGTGTAGTCCAGGGATTTGCATGGAAATTTACTTGCACGGCAACAGAGCCAAGGTTATG
TATAGAGCAGTGAACCTGAAGAGACCTAGAGATGATTAACTGACAATGAAATGGCGACCTGGAGCCTAGTATATTCAGTC
AAAGGAGCACTGTAATTGGGCAATTTTCAAGCCCGCCTCTGAGATCAATCTGTTGTAAGGATGTTTGTCTCTCGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis