Browse Element(s) Details


Os.52957.1.S1_at

Description gb:AK070112.1
DB_XREF= gi:32980136
TID=Os.52957.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041O17, full insert sequence.
FL= gb:AK070112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1260011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein
LOC_Os07g12590Os.23876.1.S1_at11/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12590OsAffx.16229.1.S1_x_at1/117+7182309..7185281F-box domain containing protein, expressed
LOC_Os07g12600Os.52957.1.S1_at11/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12600OsAffx.16229.1.S1_x_at7/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12610Os.50765.1.S1_at11/117+7204847..7207841F-box domain containing protein, expressed
LOC_Os07g12620OsAffx.5303.1.S1_at2/117+7212956..7213675hypothetical protein
LOC_Os07g12630Os.49557.1.S1_at11/117+7222897..7226547transcription elongation factor S-II family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52957.1.S1_at--311--8971Chr07:7197109..7197133 (25 bp)
TGAAACCAGGCAAATTCGGGCCTTC
LOC_Os07g12600
Os.52957.1.S1_at--544--9711Chr07:7197076..7197100 (25 bp)
TCAACTAGGGTTAAGGATGTCCGTC
LOC_Os07g12600
Os.52957.1.S1_at--908--2911Chr07:7197064..7197088 (25 bp)
AAGGATGTCCGTCTGTCATGATACA
LOC_Os07g12600
Os.52957.1.S1_at--986--2051Chr07:7197027..7197051 (25 bp)
ACTTGGTTATGGTTGATTGCACGAC
LOC_Os07g12600
Os.52957.1.S1_at--49--10791Chr07:7197015..7197039 (25 bp)
TTGATTGCACGACTCACAACTTGCG
LOC_Os07g12600
Os.52957.1.S1_at--335--5711Chr07:7197005..7197029 (25 bp)
GACTCACAACTTGCGCCTTAATGTG
LOC_Os07g12600
Os.52957.1.S1_at--855--8151Chr07:7196964..7196988 (25 bp)
GGAAAGTTTTCATCCTGCTGGTGAA
LOC_Os07g12600
Os.52957.1.S1_at--279--9271Chr07:7196952..7196976 (25 bp)
TCCTGCTGGTGAAAATTGTCTGATC
LOC_Os07g12600
Os.52957.1.S1_at--530--7171Chr07:7196935..7196959 (25 bp)
GTCTGATCGAAAGTTTGTTCCATTT
LOC_Os07g12600
Os.52957.1.S1_at--531--2291Chr07:7196910..7196934 (25 bp)
AAATGTGAATGCTGCCTGACCGAAA
LOC_Os07g12600
Os.52957.1.S1_at--587--9091Chr07:7196901..7196925 (25 bp)
TGCTGCCTGACCGAAAGGTTCAAAT
LOC_Os07g12600
Target Sequence 
TGAAACCAGGCAAATTCGGGCCTTCCTTTCAGATCAACTAGGGTTAAGGATGTCCGTCTGTCATGATACAGGATTGTCGT
ATACTTGGTTATGGTTGATTGCACGACTCACAACTTGCGCCTTAATGTGTNTTNACATGCTCTGAGGAAAGTTTTCATCC
TGCTGGTGAAAATTGTCTGATCGAAAGTTTGTTCCATTTAAATGTGAATGCTGCCTGACCGAAAGGTTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis