Browse Element(s) Details


Os.49557.1.S1_at

Description gb:AK103353.1
DB_XREF= gi:32988562
TID=Os.49557.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126I22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126I22, full insert sequence.
FL= gb:AK103353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1263011/11transcription elongation factor S-II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12600Os.52957.1.S1_at11/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12600OsAffx.16229.1.S1_x_at7/117+7196890..7200216F-box domain containing protein, expressed
LOC_Os07g12610Os.50765.1.S1_at11/117+7204847..7207841F-box domain containing protein, expressed
LOC_Os07g12620OsAffx.5303.1.S1_at2/117+7212956..7213675hypothetical protein
LOC_Os07g12630Os.49557.1.S1_at11/117+7222897..7226547transcription elongation factor S-II family protein, expressed
LOC_Os07g12640Os.18760.1.A1_at10/117+7227470..7230598NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus family protein, expressed
LOC_Os07g12650Os.53151.1.S1_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12650Os.12061.1.S1_s_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12660OsAffx.16230.1.S1_at11/117+7233895..7234296hypothetical protein
LOC_Os07g12670OsAffx.16231.1.S1_at11/117+7237465..7239409hypothetical protein
LOC_Os07g12670Os.57457.1.S1_x_at1/117+7237465..7239409hypothetical protein
LOC_Os07g12680OsAffx.28420.1.S1_at11/117+7242448..7243321LZ-NBS-LRR class RGA, putative
LOC_Os07g12690Os.46012.2.S1_x_at9/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.46012.3.S1_x_at6/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.27088.1.A1_x_at3/117+7246141..7250932retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006354biological_processRNA elongation
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49557.1.S1_at--629--6291Chr07:7223448..7223472 (25 bp)
GATGATCACAACACAGACTTCCGGA
LOC_Os07g12630
Os.49557.1.S1_at--802--7671Chr07:7223420..7223444 (25 bp)
GGGTTCTTCTAGGACAAGTGCAGCC
LOC_Os07g12630
Os.49557.1.S1_at--1058--5991Chr07:7223394..7223418 (25 bp)
GAGAGAATTGCTGACCTAACCCCGA
LOC_Os07g12630
Os.49557.1.S1_at--794--2951Chr07:7223365..7223389 (25 bp)
AATGGCTAGCGACACCAGGAAGCTT
LOC_Os07g12630
Os.49557.1.S1_at--771--8011Chr07:7223295..7223319 (25 bp)
GGAGGAGCACCGAAGGCCACCACTG
LOC_Os07g12630
Os.49557.1.S1_at--273--1871Chr07:7223201..7223225 (25 bp)
ACGAGCCGATGACGACGTTCGTGAC
LOC_Os07g12630
Os.49557.1.S1_at--233--6731Chr07:7223149..7223173 (25 bp)
GTTCTGCTAAGCTAGGCACATCCTA
LOC_Os07g12630
Os.49557.1.S1_at--817--5311Chr07:7223090..7223114 (25 bp)
GACAGGCAGGTTAGTTTCGGGCCCT
LOC_Os07g12630
Os.49557.1.S1_at--1131--10131Chr07:7223062..7223086 (25 bp)
TATCTGGGCCCGTTTCATCTTTTTT
LOC_Os07g12630
Os.49557.1.S1_at--3--10851Chr07:7222970..7222994 (25 bp)
TTGGGCTTGCATTGTCAGGCTACTG
LOC_Os07g12630
Os.49557.1.S1_at--908--911Chr07:7222954..7222978 (25 bp)
AGGCTACTGCTGTTGTACTTATCAG
LOC_Os07g12630
Target Sequence 
GATGATCACAACACAGACTTCCGGAGAAGGGTTCTTCTAGGACAAGTGCAGCCTGAGAGAATTGCTGACCTAACCCCGAC
AGAAATGGCTAGCGACACCAGGAAGCTTGAGAACAAGAAGATCGAGGAGAAGGCTCTGTTCGAGTGCGAGCGTGGAGGAG
CACCGAAGGCCACCACTGATCNGTTCAAGTGTGGCAGGTGCGGCCAGCGCAAGACTACCTACTACCAGCTCCAGACTCGG
AGCGCCGACGAGCCGATGACGACGTTCGTGACCNGCGTGAACTGCAACAATCACTGGAAGTTCTGCTAAGCTAGGCACAT
CCTACTGAGAAGTGTTAGTGTAGTTGACCCTGGAGTTTGACAGGCAGGTTAGTTTCGGGCCCTGCTTATCTGGGCCCGTT
TCATCTTTTTTCCCCTTAAGTTAGCTTGTTCCGAATTCNATTTGTTCTAGTGCCATTNGACTGCATAATGGCCGGCCGTT
GGGCTTGCATTGTCAGGCTACTGCTGTTGTACTTATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis