Browse Element(s) Details


OsAffx.28420.1.S1_at

Description tigr:9635.m01246
TID=OsAffx.28420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1268011/11LZ-NBS-LRR class RGA, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12630Os.49557.1.S1_at11/117+7222897..7226547transcription elongation factor S-II family protein, expressed
LOC_Os07g12640Os.18760.1.A1_at10/117+7227470..7230598NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus family protein, expressed
LOC_Os07g12650Os.53151.1.S1_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12650Os.12061.1.S1_s_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12660OsAffx.16230.1.S1_at11/117+7233895..7234296hypothetical protein
LOC_Os07g12670OsAffx.16231.1.S1_at11/117+7237465..7239409hypothetical protein
LOC_Os07g12670Os.57457.1.S1_x_at1/117+7237465..7239409hypothetical protein
LOC_Os07g12680OsAffx.28420.1.S1_at11/117+7242448..7243321LZ-NBS-LRR class RGA, putative
LOC_Os07g12690Os.46012.2.S1_x_at9/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.46012.3.S1_x_at6/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.27088.1.A1_x_at3/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12700NANA7+7254639..7255772expressed protein
LOC_Os07g12710OsAffx.28422.1.S1_at11/117+7256947..7258733GIY-YIG catalytic domain containing protein, expressed
LOC_Os07g12720NANA7+7267190..7267696hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28420.1.S1_at--613--5311Chr07:7242958..7242982 (25 bp)
GAAGGTTGTGGCTCACCATCAGATT
LOC_Os07g12680
OsAffx.28420.1.S1_at--728--6331Chr07:7242861..7242885 (25 bp)
GATGCTGTCATTGCACGAAGATCGG
LOC_Os07g12680
OsAffx.28420.1.S1_at--808--491Chr07:7242841..7242865 (25 bp)
ATCGGAGAGTATTGATCCTCGGCTA
LOC_Os07g12680
OsAffx.28420.1.S1_at--163--9271Chr07:7242826..7242850 (25 bp)
TCCTCGGCTAGGTGCTATGTACAAA
LOC_Os07g12680
OsAffx.28420.1.S1_at--968--1551Chr07:7242791..7242815 (25 bp)
AGCTAGTCGGTCTCGATGGGCCAAA
LOC_Os07g12680
OsAffx.28420.1.S1_at--232--8551Chr07:7242688..7242712 (25 bp)
TGGAGGCCTCGGCAAGACAACGATT
LOC_Os07g12680
OsAffx.28420.1.S1_at--1028--5611Chr07:7242673..7242697 (25 bp)
GACAACGATTGCCAACGCATTGCTT
LOC_Os07g12680
OsAffx.28420.1.S1_at--153--2611Chr07:7242660..7242684 (25 bp)
AACGCATTGCTTCATGAGCTCAGAG
LOC_Os07g12680
OsAffx.28420.1.S1_at--585--4431Chr07:7242623..7242647 (25 bp)
GCCATTTCTTTGCATTGGTGTCCAA
LOC_Os07g12680
OsAffx.28420.1.S1_at--1045--6071Chr07:7242571..7242595 (25 bp)
GAGTATACTCCATCAACTTGACAAC
LOC_Os07g12680
OsAffx.28420.1.S1_at--60--5711Chr07:7242527..7242551 (25 bp)
GACTAGCAGACTTCCAACTTATAAA
LOC_Os07g12680
Target Sequence 
GAAGGTTGTGGCTCACCATCAGATTGCAAGGGAGATAAAGGACATCAAGAAACTTCTTGAGGATGCGAGTAAGCGCCGCG
AGAGGTACAAGATTGATGATGCTGTCATTGCACGAAGATCGGAGAGTATTGATCCTCGGCTAGGTGCTATGTACAAAAAG
GAGACGGAGCTAGTCGGTCTCGATGGGCCAAAGAATGTGCTAGTGAAGACACTCATGGAGGAAGATGGAAAATTGAGGAA
ACACCGAGATATAATTTCGATTGTTGGATTTGGAGGCCTCGGCAAGACAACGATTGCCAACGCATTGCTTCATGAGCTCA
GAGTAAAGTTTGATTGCCATTTCTTTGCATTGGTGTCCAACAAATCTGATATCAGGAATATTCTAAAGAGTATACTCCAT
CAACTTGACAACAAAGCCAACATATTTGAAGGACTAGCAGACTTCCAACTTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis