Browse Element(s) Details


OsAffx.28422.1.S1_at

Description tigr:9635.m01249
TID=OsAffx.28422.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1271011/11GIY-YIG catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12650Os.53151.1.S1_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12650Os.12061.1.S1_s_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12660OsAffx.16230.1.S1_at11/117+7233895..7234296hypothetical protein
LOC_Os07g12670OsAffx.16231.1.S1_at11/117+7237465..7239409hypothetical protein
LOC_Os07g12670Os.57457.1.S1_x_at1/117+7237465..7239409hypothetical protein
LOC_Os07g12680OsAffx.28420.1.S1_at11/117+7242448..7243321LZ-NBS-LRR class RGA, putative
LOC_Os07g12690Os.46012.2.S1_x_at9/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.46012.3.S1_x_at6/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.27088.1.A1_x_at3/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12700NANA7+7254639..7255772expressed protein
LOC_Os07g12710OsAffx.28422.1.S1_at11/117+7256947..7258733GIY-YIG catalytic domain containing protein, expressed
LOC_Os07g12720NANA7+7267190..7267696hypothetical protein
LOC_Os07g12730Os.5957.1.S1_at10/117+7271198..7273025expressed protein
LOC_Os07g12740Os.40360.1.S1_at9/117+7276824..7279565hypothetical protein
LOC_Os07g12740Os.40360.1.S1_x_at8/117+7276824..7279565hypothetical protein
LOC_Os07g12740Os.40855.5.S1_x_at3/117+7276824..7279565hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0005622cellular_componentintracellular
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28422.1.S1_at--793--4471Chr07:7257614..7257638 (25 bp)
GCCTGCAAGAGACGAACTTTCAGTT
LOC_Os07g12710
OsAffx.28422.1.S1_at--783--5471Chr07:7257601..7257625 (25 bp)
GAACTTTCAGTTTCAGAGCATGGTT
LOC_Os07g12710
OsAffx.28422.1.S1_at--1000--4991Chr07:7257584..7257608 (25 bp)
GCATGGTTTGGTTCAATTGCCTGAA
LOC_Os07g12710
OsAffx.28422.1.S1_at--930--5611Chr07:7257427..7257451 (25 bp)
GACAACCCATTGTTTGAAGCACAAC
LOC_Os07g12710
OsAffx.28422.1.S1_at--912--9031Chr07:7257380..7257404 (25 bp)
TGCAGCCTCTGCAGTTAGTGATGCT
LOC_Os07g12710
OsAffx.28422.1.S1_at--721--7591Chr07:7257297..7257321 (25 bp)
GGGAATCGGACGGATCGGCAACATC
LOC_Os07g12710
OsAffx.28422.1.S1_at--924--10591Chr07:7257263..7257287 (25 bp)
TTCGTCGGGTTTGTCCAGTGATGAT
LOC_Os07g12710
OsAffx.28422.1.S1_at--959--9391Chr07:7257199..7257223 (25 bp)
TCGTCTCCATTTCCATATGTTGGGA
LOC_Os07g12710
OsAffx.28422.1.S1_at--727--7111Chr07:7257164..7257188 (25 bp)
GTCAGATGAGAGTGGCCCTGCTCCT
LOC_Os07g12710
OsAffx.28422.1.S1_at--1158--6251Chr07:7257124..7257148 (25 bp)
GATGTGATAAACTTGGTTACCCCAA
LOC_Os07g12710
OsAffx.28422.1.S1_at--1101--3171Chr07:7257102..7257126 (25 bp)
CAATTGCTCGTCGTCTTGGGAGAAA
LOC_Os07g12710
Target Sequence 
GCCTGCAAGAGACGAACTTTCAGTTTCAGAGCATGGTTTGGTTCAATTGCCTGAAGAAGAAATTAGAAATGCAGGCAATG
AATCGGATTACGACGATTTCGCTCCGATCGATTGGAGTGTGTTTGGAGCAGCAGAAGCAAGAGGATTGGACGAATCATCG
GAACATGATGAGTGGATGGGACAAGAAGACAACCCATTGTTTGAAGCACAACCATTGGAACATGAAACCAGAACTGCAGC
CTCTGCAGTTAGTGATGCTGAATGTTCCACTGATGAGCTTGGTTACATGTCATGGAGTGGAATTCATGAGACGACAAGGG
AATCGGACGGATCGGCAACATCGCCTCGATGTTCGTCGGGTTTGTCCAGTGATGATGAGGGTGGAAGAATACTAGACGGT
GTGTCAGGACAGATTTCGTCTCCATTTCCATATGTTGGGAGGAGTTCATCGTCAGATGAGAGTGGCCCTGCTCCTCTCTT
CCTTGAGAAAGATGTGATAAACTTGGTTACCCCAATTGCTCGTCGTCTTGGGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis