Browse Element(s) Details


OsAffx.16230.1.S1_at

Description tigr:9635.m01244
TID=OsAffx.16230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1266011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12620OsAffx.5303.1.S1_at2/117+7212956..7213675hypothetical protein
LOC_Os07g12630Os.49557.1.S1_at11/117+7222897..7226547transcription elongation factor S-II family protein, expressed
LOC_Os07g12640Os.18760.1.A1_at10/117+7227470..7230598NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus family protein, expressed
LOC_Os07g12650Os.53151.1.S1_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12650Os.12061.1.S1_s_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12660OsAffx.16230.1.S1_at11/117+7233895..7234296hypothetical protein
LOC_Os07g12670OsAffx.16231.1.S1_at11/117+7237465..7239409hypothetical protein
LOC_Os07g12670Os.57457.1.S1_x_at1/117+7237465..7239409hypothetical protein
LOC_Os07g12680OsAffx.28420.1.S1_at11/117+7242448..7243321LZ-NBS-LRR class RGA, putative
LOC_Os07g12690Os.46012.2.S1_x_at9/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.46012.3.S1_x_at6/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.27088.1.A1_x_at3/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12700NANA7+7254639..7255772expressed protein
LOC_Os07g12710OsAffx.28422.1.S1_at11/117+7256947..7258733GIY-YIG catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16230.1.S1_at--858--3351Chr07:7233964..7233988 (25 bp)
CACCGCTGGAGAACCGAGCGGCCAG
LOC_Os07g12660
OsAffx.16230.1.S1_at--1066--4131Chr07:7234001..7234025 (25 bp)
CGCGTGAGGCCAAATCTCGGTGGCA
LOC_Os07g12660
OsAffx.16230.1.S1_at--1051--8871Chr07:7234005..7234029 (25 bp)
TGAGGCCAAATCTCGGTGGCACCCC
LOC_Os07g12660
OsAffx.16230.1.S1_at--274--7171Chr07:7234031..7234055 (25 bp)
GTCTCTGCACGTGGAAGGCGGGCTG
LOC_Os07g12660
OsAffx.16230.1.S1_at--1017--8191Chr07:7234043..7234067 (25 bp)
GGAAGGCGGGCTGGCGCACAGAGCA
LOC_Os07g12660
OsAffx.16230.1.S1_at--1155--2131Chr07:7234060..7234084 (25 bp)
ACAGAGCAGAGGTTGACGACGCAGC
LOC_Os07g12660
OsAffx.16230.1.S1_at--775--5791Chr07:7234077..7234101 (25 bp)
GACGCAGCGTGGAGGCGTCGTATCC
LOC_Os07g12660
OsAffx.16230.1.S1_at--453--7971Chr07:7234138..7234162 (25 bp)
GGATCTGGTACCTCTGCGCGCGGAT
LOC_Os07g12660
OsAffx.16230.1.S1_at--55--9471Chr07:7234141..7234165 (25 bp)
TCTGGTACCTCTGCGCGCGGATCTG
LOC_Os07g12660
OsAffx.16230.1.S1_at--460--6411Chr07:7234160..7234184 (25 bp)
GATCTGACCGGTGCAAGCCGCTCAA
LOC_Os07g12660
OsAffx.16230.1.S1_at--1076--5051Chr07:7234207..7234231 (25 bp)
GCAGCGACTTTTGGCGGTGGACGAC
LOC_Os07g12660
Target Sequence 
CACCGCTGGAGAACCGAGCGGCCAGCCGGGATGACGGCGCGTGAGGCCAAATCTCGGTGGCACCCCCGTCTCTGCACGTG
GAAGGCGGGCTGGCGCACAGAGCAGAGGTTGACGACGCAGCGTGGAGGCGTCGTATCCGACGCCACCGCGGCCAGATCCG
GTCCCCCCGTGGGTGGATCTGGTACCTCTGCGCGCGGATCTGACCGGTGCAAGCCGCTCAAGCAGCGACGACGGGAGGCG
GAGGCAGCGACTTTTGGCGGTGGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis