Browse Element(s) Details


Os.18760.1.A1_at

Description gb:AK065591.1
DB_XREF= gi:32975609
TID=Os.18760.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027J04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027J04, full insert sequence.
FL= gb:AK065591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1264010/11NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12610Os.50765.1.S1_at11/117+7204847..7207841F-box domain containing protein, expressed
LOC_Os07g12620OsAffx.5303.1.S1_at2/117+7212956..7213675hypothetical protein
LOC_Os07g12630Os.49557.1.S1_at11/117+7222897..7226547transcription elongation factor S-II family protein, expressed
LOC_Os07g12640Os.18760.1.A1_at10/117+7227470..7230598NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus family protein, expressed
LOC_Os07g12650Os.53151.1.S1_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12650Os.12061.1.S1_s_at11/117+7231456..723350140S ribosomal protein S12, putative, expressed
LOC_Os07g12660OsAffx.16230.1.S1_at11/117+7233895..7234296hypothetical protein
LOC_Os07g12670OsAffx.16231.1.S1_at11/117+7237465..7239409hypothetical protein
LOC_Os07g12670Os.57457.1.S1_x_at1/117+7237465..7239409hypothetical protein
LOC_Os07g12680OsAffx.28420.1.S1_at11/117+7242448..7243321LZ-NBS-LRR class RGA, putative
LOC_Os07g12690Os.46012.2.S1_x_at9/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.46012.3.S1_x_at6/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.27088.1.A1_x_at3/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12700NANA7+7254639..7255772expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006072biological_processglycerol-3-phosphate metabolism
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004367molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18760.1.A1_at--845--7571Chr07:7228539..7228563 (25 bp)
GGGCTGTCATCGCATTGGCTCAGAA
LOC_Os07g12640
Os.18760.1.A1_at--375--9831Chr07:7228506..7228530 (25 bp)
TAAAAATGCCAGTCTTGACAGCAGT
LOC_Os07g12640
Os.18760.1.A1_at--473--8951Chr07:7228463..7228487 (25 bp)
TGAACTAACCCCAAAGAAGGCTGTT
LOC_Os07g12640
Os.18760.1.A1_at--429--10131Chr07:7227719..7227743 (25 bp)
TATGCTCCAAAATGGGCTTCTCCGT
LOC_Os07g12640
Os.18760.1.A1_at--762--3271Chr07:7227712..7227736 (25 bp)
CAAAATGGGCTTCTCCGTGTTTGAT
LOC_Os07g12640
Os.18760.1.A1_at--320--10591Chr07:7227661..7227685 (25 bp)
TTCTCTCTCTTAATCCACTTGAGCT
LOC_Os07g12640
Os.18760.1.A1_at--754--3031Chr07:7227650..7227674 (25 bp)
AATCCACTTGAGCTTTCAGATATGA
LOC_Os07g12640
Os.18760.1.A1_at--491--9951Chr07:7227589..7227613 (25 bp)
TACGCTCGTATGCACAGATAGAGAG
LOC_Os07g12640
Os.18760.1.A1_at--63--7211Chr07:7227526..7227550 (25 bp)
GTCGTTGTCCGAAAGAAGACCACAG
LOC_Os07g12640
Os.18760.1.A1_at--785--5851Chr07:7227509..7227533 (25 bp)
GACCACAGTTTTGTTTCTGATCTTT
LOC_Os07g12640
Os.18760.1.A1_at--996--5211Chr07:7227419..7227443 (25 bp)
GAATTTTCTTCAATTTTACAGGTGC
NONE
Target Sequence 
GGGCTGTCATCGCATTGGCTCAGAAGTACCATGTAAAAATGCCAGTCTTGACAGCAGTNGCACGGATAATTGACAATGAA
CTAACCCCAAAGAAGGCTGTTATGGAGTTAATGAATCTTCCACAGGTTGAGGAAGTATNACAGCAATCTAATGGAATGAT
TTAACTNACTCTGCCGGCCGCCTGCTGNACTCAAATTAAACTAATNATATGCTCCAAAATGGGCTTCTCCGTGTTTGATN
ATCTACATATTCAGAAGATGTTCTCTTCTCTCTCTTAATCCACTTGAGCTTTCAGATATGAAAATGTTATTTTTACACGA
GAAAACGAAGGCGTGTNTACGCTCGTATGCACAGATAGAGAGNGGATATAGTTTATAGCACCAGAAAGAAATAGGACAAG
GTCGTTGTCCGAAAGAAGACCACAGTTTTGTTTCTGATCTTTTTAGAATCATTTGATCTATAAATATGATTCTTTCTNAT
TTTTCTTCTGTATCGAAAACATGCAGTGAATTTTCTTCAATTTTACAGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18760.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis