Browse Element(s) Details


Os.20010.1.S1_at

Description gb:AK069634.1
DB_XREF= gi:32979658
TID=Os.20010.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C27129(C51039)~similar to RNA-binding protein (OSJNBa0066H10.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024E22, full insert sequence.
FL= gb:AK069634.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g124909/11KH domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12440OsAffx.28417.1.S1_at11/117+7093829..7094120hypothetical protein
LOC_Os07g12450OsAffx.28418.1.S1_at11/117+7095029..7095562hypothetical protein
LOC_Os07g12460OsAffx.10207.1.S1_x_at6/117+7104578..7104853hypothetical protein
LOC_Os07g12470Os.34312.1.S1_at11/117+7105271..7108429expressed protein
LOC_Os07g12480OsAffx.5301.1.S1_at11/117+7109061..7111043Protein kinase domain containing protein
LOC_Os07g12490Os.20010.1.S1_at9/117+7119023..7124714KH domain-containing protein, putative, expressed
LOC_Os07g12500Os.35344.18.S1_x_at10/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500Os.35344.3.S1_x_at9/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500OsAffx.22940.5.S1_x_at3/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12510OsAffx.22431.1.S1_s_at11/117+7137873..7139079AP2 domain containing protein, expressed
LOC_Os07g12520Os.50233.1.S1_at11/117+7143853..7148040SWIM zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20010.1.S1_at--500--5551Chr07:7124220..7124244 (25 bp)
GAAACGTGCAAAACCGAGCCATTAG
LOC_Os07g12490
Os.20010.1.S1_at--52--2251Chr07:7124246..7124270 (25 bp)
AAATATGGTTCGACCTCACCGCTTT
LOC_Os07g12490
Os.20010.1.S1_at--161--7911Chr07:7124330..7124354 (25 bp)
GGTTCGTTGTATGGGCTATTGTGTA
LOC_Os07g12490
Os.20010.1.S1_at--1015--7171Chr07:7124385..7124409 (25 bp)
GTCTGGTACCAAATGGTTCTCTCCT
LOC_Os07g12490
Os.20010.1.S1_at--749--2971Chr07:7124396..7124420 (25 bp)
AATGGTTCTCTCCTCTGGATGAGGA
LOC_Os07g12490
Os.20010.1.S1_at--760--2351Chr07:7124432..7124456 (25 bp)
AAAGCTGCCTCAAATCTTTTGGCCG
LOC_Os07g12490
Os.20010.1.S1_at--111--10831Chr07:7124450..7124474 (25 bp)
TTGGCCGGTCCAGATGTGTTGTTGT
LOC_Os07g12490
Os.20010.1.S1_at--749--6711Chr07:7124500..7124524 (25 bp)
GTTCTTTATCGACTGTTAACCCTGC
LOC_Os07g12490
Os.20010.1.S1_at--49--1971Chr07:7124511..7124535 (25 bp)
ACTGTTAACCCTGCTAGCTTGTGAT
LOC_Os07g12490
Os.20010.1.S1_at--713--9791Chr07:7124710..7124734 (25 bp)
TAACCATGTGGATTCAGGGCTCTCT
NONE
Os.20010.1.S1_at--615--1071Chr07:7124725..7124749 (25 bp)
AGGGCTCTCTGTATTGCAGTGTGGT
NONE
Target Sequence 
GAAACGTGCAAAACCGAGCCATTAGCAAATATGGTTCGACCTCACCGCTTTCNTCAAGGTCAAGGAGCTCCTACNCGGCT
ATGCCCCTAGGCATGCCGTCGAGCTNGAGTGGTTCGTTGTATGGGCTATTGTGTAAAAAACAGTATGCCTTTTACTGGAT
GATTAGTCTGGTACCAAATGGTTCTCTCCTCTGGATGAGGAGATCGATGGTTAAAGCTGCCTCAAATCTTTTGGCCGGTC
CAGATGTGTTGTTGTAACTTGTAAGGTTCNCATTCATTTTGTTCTTTATCGACTGTTAACCCTGCTAGCTTGTGATGCTA
AGATAGGTGGTTTTCCCTTTTTTCAGGAGAGATTAGAGAAGTCTTGGTAATGTAAGATTTCAGTTTAGAAGTTGAGTTAG
ATTGNATCATATTTGCCTGAACATCATGGAGTTGCAAAATGCAGNTCATGACCGTGTTATGCAATAGTTTGATGGGAAAA
ATCTTTGAATTAACCATGTGGATTCAGGGCTCTCTGTATTGCAGTGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis