Browse Element(s) Details


OsAffx.10207.1.S1_x_at

Description gb:NM_186678.1
DB_XREF= gi:34900441
TID=OsAffx.10207.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OSJNBa0066H10.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g124606/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12410Os.46012.2.S1_x_at8/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.46012.3.S1_x_at7/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.27088.1.A1_x_at5/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.54691.1.S1_x_at1/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12420OsAffx.10222.1.S1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.45902.1.A1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.10263.1.S1_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.46808.2.S1_x_at1/117+7082910..7085643hypothetical protein
LOC_Os07g12430OsAffx.5300.2.S1_at11/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.5300.1.S1_s_at10/117+7090152..7091812hypothetical protein
LOC_Os07g12430Os.27135.1.A1_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.17065.1.A1_s_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12440OsAffx.28417.1.S1_at11/117+7093829..7094120hypothetical protein
LOC_Os07g12450OsAffx.28418.1.S1_at11/117+7095029..7095562hypothetical protein
LOC_Os07g12460OsAffx.10207.1.S1_x_at6/117+7104578..7104853hypothetical protein
LOC_Os07g12470Os.34312.1.S1_at11/117+7105271..7108429expressed protein
LOC_Os07g12480OsAffx.5301.1.S1_at11/117+7109061..7111043Protein kinase domain containing protein
LOC_Os07g12490Os.20010.1.S1_at9/117+7119023..7124714KH domain-containing protein, putative, expressed
LOC_Os07g12500Os.35344.18.S1_x_at10/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500Os.35344.3.S1_x_at9/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500OsAffx.22940.5.S1_x_at3/117+7129728..7135775transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10207.1.S1_x_at--524--7231Chr07:7103636..7103660 (25 bp)
GTCGCTCGCTGAAGGACTGAGCCGA
NONE
OsAffx.10207.1.S1_x_at--718--1971Chr07:7103651..7103675 (25 bp)
ACTGAGCCGACCGAGTGGCGCTGGA
NONE
OsAffx.10207.1.S1_x_at--425--1511Chr07:7103688..7103712 (25 bp)
AGCACCAGGCGCTCGCAGTGGCTAC
NONE
OsAffx.10207.1.S1_x_at--134--3471Chr07:7103703..7103727 (25 bp)
CAGTGGCTACGAGCGCAGGTGGCAG
NONE
OsAffx.10207.1.S1_x_at--294--8011Chr07:7104322..7104346 (25 bp)
GGAGGTCCGCGGTAAAGGTGGCACG
NONE
OsAffx.10207.1.S1_x_at--633--1891Chr07:7104621..7104645 (25 bp)
ACGTTCTTGGCCGACCTGGGCATGG
LOC_Os07g12460
OsAffx.10207.1.S1_x_at--437--7611Chr07:7104645..7104669 (25 bp)
GGGAGGGAGTACTGGTCACCTTCAC
LOC_Os07g12460
OsAffx.10207.1.S1_x_at--287--1751Chr07:7104662..7104686 (25 bp)
ACCTTCACCACCAATGGAGAGGAGC
LOC_Os07g12460
OsAffx.10207.1.S1_x_at--894--971Chr07:7104681..7104705 (25 bp)
AGGAGCACGGTGACATTCTTGGCGT
LOC_Os07g12460
OsAffx.10207.1.S1_x_at--521--10551Chr07:7104696..7104720 (25 bp)
TTCTTGGCGTGCTGGTAGTGCTTGA
LOC_Os07g12460
OsAffx.10207.1.S1_x_at--718--10078Chr11:28198794..28198817 (24 bp)
TAGTGCTTGATGTCGGCGCCGACGC
NONE
Target Sequence 
GTCGCTCGCTGAAGGACTGAGCCGACCGAGTGGCGCTGGAGGCGGAGGTGCGAGCACCAGGCGCTCGCAGTGGCTACGAG
CGCAGGTGGCAGCGGGATCGGGGGTGGCAGGGAGCGGCGAGGTTGGGGGTGGCGGTGAGGAATGGGGAGATGTGGCGCGC
CGGCCGACAAAGCGGTGCGAGGAGGTCCATGGCGGCGGCGCGGTAGGGTGTGGCGGTGGAGCGGCAACACGCGACGAGGA
GGTCCGCGGTAAAGGTGGCACGGGGCGCGGCGAGGAGGCCGCAAGCGACGGCACGGCGGTTGCAGGCTGCGGGGTGGAAC
AAGCCATGGCGATGGCCGCCGAGGTAGGCGTCCCAGAGGTGGTCGGCGACGTTCTTGGCCGACCTGGGCATGGGGAGGGA
GTACTGGTCACCTTCACCACCAATGGAGAGGAGCACGGTGACATTCTTGGCGTGCTGGTAGTGCTTGATGTCGGCGCCGA
CGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10207.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis