Browse Element(s) Details


OsAffx.5300.1.S1_s_at

Description gb:NM_186676.1
DB_XREF= gi:34900437
GEN=OSJNBa0066H10.27
TID=OsAffx.5300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) contains EST AU166376(C11764)~unknwon protein (OSJNBa0066H10.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1243010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12400OsAffx.28415.1.S1_at11/117+7068820..7069255hypothetical protein
LOC_Os07g12410Os.46012.2.S1_x_at8/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.46012.3.S1_x_at7/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.27088.1.A1_x_at5/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.54691.1.S1_x_at1/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12420OsAffx.10222.1.S1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.45902.1.A1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.10263.1.S1_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.46808.2.S1_x_at1/117+7082910..7085643hypothetical protein
LOC_Os07g12430OsAffx.5300.2.S1_at11/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.5300.1.S1_s_at10/117+7090152..7091812hypothetical protein
LOC_Os07g12430Os.27135.1.A1_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.17065.1.A1_s_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12440OsAffx.28417.1.S1_at11/117+7093829..7094120hypothetical protein
LOC_Os07g12450OsAffx.28418.1.S1_at11/117+7095029..7095562hypothetical protein
LOC_Os07g12460OsAffx.10207.1.S1_x_at6/117+7104578..7104853hypothetical protein
LOC_Os07g12470Os.34312.1.S1_at11/117+7105271..7108429expressed protein
LOC_Os07g12480OsAffx.5301.1.S1_at11/117+7109061..7111043Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5300.1.S1_s_at--760--1751Chr07:7091265..7091289 (25 bp)
ACCCGGTTCCTTTCGGAATGAGCAT
LOC_Os07g12430
OsAffx.5300.1.S1_s_at--894--5271Chr07:7091250..7091274 (25 bp)
GAATGAGCATTGATAGCATCCTTGA
LOC_Os07g12430
OsAffx.5300.1.S1_s_at--440--5932Chr11:10502015..10502187 (25 bp)
GAGCATTGATAGCATCCTTGATGTT
NONE
OsAffx.5300.1.S1_s_at--101--9252Chr03:14184894..14184913 (20 bp)
TCCTTGATGTTGTTCCCTTGTTAGA
NONE
OsAffx.5300.1.S1_s_at--50--6291Chr07:7091227..7091251 (25 bp)
GATGTTGTTCCCTTGTTAGAGGCTC
LOC_Os07g12430
OsAffx.5300.1.S1_s_at--571--6671Chr07:7091221..7091245 (25 bp)
GTTCCCTTGTTAGAGGCTCTGCTTA
LOC_Os07g12430
OsAffx.5300.1.S1_s_at--197--6791Chr07:7091217..7091237 (21 bp)
GTTAGAGGCTCTGCTTAGAAGACCA
LOC_Os07g12430
OsAffx.5300.1.S1_s_at--1032--8311NONE
GGCTCTGCTTAGAAGACCAACGTAT
NONE
OsAffx.5300.1.S1_s_at--189--5371Chr07:7090559..7090581 (23 bp)
GAAGACCAACGTATATCCACAACAA
LOC_Os07g12430
OsAffx.5300.1.S1_s_at--489--5851Chr07:7090556..7090580 (25 bp)
GACCAACGTATATCCACAACAAAAA
LOC_Os07g12430
OsAffx.5300.1.S1_s_at--940--3251Chr07:7090540..7090564 (25 bp)
CAACAAAAACAATGATCCTTTGGGA
LOC_Os07g12430
Target Sequence 
ACCCGGTTCCTTTCGGAATGAGCATTGATAGCATCCTTGATGTTGTTCCCTTGTTAGAGGCTCTGCTTAGAAGACCAACG
TATATCCACAACAAAAACAATGATCCTTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5300.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis