Browse Element(s) Details


Os.27135.1.A1_at

Description gb:AK108428.1
DB_XREF= gi:32993637
TID=Os.27135.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-A09, full insert sequence.
FL= gb:AK108428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2494011/11proline-rich family protein, putative, expressed
LOC_Os07g124301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os03g24940Os.27135.1.A1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_x_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_s_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_at4/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24950Os.16999.1.A1_at11/113+14212011..14214838expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27135.1.A1_at--863--9231Chr03:14192378..14192402 (25 bp)
TCCATGGTGAAGAAACGCGAGCGCG
LOC_Os03g24940
Os.27135.1.A1_at--679--10491Chr03:14192315..14192339 (25 bp)
TTCAAACCCCGTGCTGCGGTTGTAT
LOC_Os03g24940
Os.27135.1.A1_at--889--4191Chr03:14192308..14192332 (25 bp)
CCCGTGCTGCGGTTGTATGTACATT
LOC_Os03g24940
Os.27135.1.A1_at--323--4771Chr03:14192303..14192327 (25 bp)
GCTGCGGTTGTATGTACATTTTCTG
LOC_Os03g24940
Os.27135.1.A1_at--1114--7011Chr03:14192290..14192314 (25 bp)
GTACATTTTCTGGTGCACATTGTGT
LOC_Os03g24940
Os.27135.1.A1_at--765--5111Chr03:14192276..14192300 (25 bp)
GCACATTGTGTTTTGCATCATGCCC
LOC_Os03g24940
Os.27135.1.A1_at--50--4971Chr03:14192262..14192286 (25 bp)
GCATCATGCCCTGTTTGTCAGTTAG
LOC_Os03g24940
Os.27135.1.A1_at--372--3531Chr03:14192258..14192282 (25 bp)
CATGCCCTGTTTGTCAGTTAGTATG
LOC_Os03g24940
Os.27135.1.A1_at--830--6711Chr03:14192231..14192255 (25 bp)
GTTCTTCCTTTGTGATGGTTCTTCT
LOC_Os03g24940
Os.27135.1.A1_at--985--8571Chr03:14192216..14192240 (25 bp)
TGGTTCTTCTGAAAGGCGACGCCTG
LOC_Os03g24940
Os.27135.1.A1_at--397--1792Chr07:7091337..7091356 (20 bp)
ACGCCTGTGGGCACCGTTTTAGCCG
LOC_Os07g12430
Target Sequence 
TCCATGGTGAAGAAACGCGAGCGCGCCACCACCGGTGCTCATCATCCTCTGATCCTCCGCAACTTCAAACCCCGTGCTGC
GGTTGTATGTACATTTTCTGGTGCACATTGTGTTTTGCATCATGCCCTGTTTGTCAGTTAGTATGNGGTTCTTCCTTTGT
GATGGTTCTTCTGAAAGGCGACGCCTGTGGGCACCGTTTTAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27135.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis