Browse Element(s) Details


OsAffx.13012.1.S1_x_at

Description tigr:9631.m02435
TID=OsAffx.13012.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2494011/11proline-rich family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os03g24940Os.27135.1.A1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_x_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_s_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_at4/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24950Os.16999.1.A1_at11/113+14212011..14214838expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13012.1.S1_x_at--844--3311Chr03:14193912..14193936 (25 bp)
CAGTGGTTCCGTGTACACCCAAAAG
LOC_Os03g24940
OsAffx.13012.1.S1_x_at--968--5511Chr03:14193505..14193692 (25 bp)
GAAAACCACAACCTGGTGCCACAAG
LOC_Os03g24940
OsAffx.13012.1.S1_x_at--459--2811Chr03:14193483..14193507 (25 bp)
AAGATCAGTATATGCTCCCGAACCA
LOC_Os03g24940
OsAffx.13012.1.S1_x_at--350--1391Chr03:14193398..14193421 (24 bp)
AGACAGCTGGGCCAATAGACCCTGA
LOC_Os03g24940
OsAffx.13012.1.S1_x_at--586--1811Chr03:14193298..14193403 (25 bp)
ACCCTGACGCTGGATTGGTCGATTA
LOC_Os03g24940
OsAffx.13012.1.S1_x_at--1099--8211Chr03:14192786..14192810 (25 bp)
GGAATTCTATTCGTCATCAATGCAG
LOC_Os03g24940
OsAffx.13012.1.S1_x_at--439--371Chr03:14192674..14192795 (25 bp)
ATCAATGCAGCTATGCGGTGTCCGA
LOC_Os03g24940
OsAffx.13012.1.S1_x_at--174--8992Chr05:29515813..29515848 (25 bp)
TGAAGCAGCTTCTCAGGCGATGTTC
NONE
OsAffx.13012.1.S1_x_at--688--7771Chr03:14192590..14192614 (25 bp)
GGTCCTGGCCTTCGAAACGACGAGA
LOC_Os03g24940
OsAffx.13012.1.S1_x_at--229--6011Chr03:14192569..14192593 (25 bp)
GAGAGAACGCAACACCGCAATCATG
LOC_Os03g24940
OsAffx.13012.1.S1_x_at--339--4271Chr03:14192539..14192563 (25 bp)
CCGGCGATTCGCCATAGATTGCAAT
LOC_Os03g24940
Target Sequence 
CAGTGGTTCCGTGTACACCCAAAAGAAAGTAACAAAGAGATTATTTCAGTACTAATAAACTATTGCAAATATGGAAAACC
ACAACCTGGTGCCACAAGATCAGTATATGCTCCCGAACCACATGACGTTGGACGGTATTTGGAAGCTGAAATTAATTATG
GTGGTGAAATTGCTATAGCAAAGACAGCTGGGCCAATAGACCCTGACGCTGGATTGGTCGATTATGTAGAGACACTCGTA
AGGAAACGTGAAACTGAGTTCAATGTTGTTGTGCTTCAGTTGAATGGAATTGATCAGCCAAAAGAGTCTGTTCATGTTCT
CAATATTGGAAAATTGAGGATGAGGCTTTCTAAAGGAAAGACAGTGGTTGCCAAGGAATTCTATTCGTCATCAATGCAGC
TATGCGGTGTCCGAGGTGGCGGTGAAGCAGCTTCTCAGGCGATGTTCTGGCGGCCGAGGAATGACCTCAGCATGGTCCTG
GCCTTCGAAACGACGAGAGAACGCAACACCGCAATCATGCTCACCCGGCGATTCGCCATAGATTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13012.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis