Browse Element(s) Details


Os.48734.1.S1_s_at

Description gb:CR288034
DB_XREF= gi:44674600
DB_XREF=CR288034
CLONE=y698d04p5
TID=Os.48734.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48734 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180245.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2494011/11proline-rich family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os03g24940Os.27135.1.A1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_x_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_s_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_at4/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24950Os.16999.1.A1_at11/113+14212011..14214838expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48734.1.S1_s_at--429--10371Chr03:14199337..14199361 (25 bp)
TTTTCTTTCTTCTCGACGCAAACCA
LOC_Os03g24940
Os.48734.1.S1_s_at--890--1751Chr03:14199274..14199298 (25 bp)
ACGCGGGAAACCAGCCTCAAGTTCG
LOC_Os03g24940
Os.48734.1.S1_s_at--758--9711Chr03:14199258..14199282 (25 bp)
TCAAGTTCGTCATCCCCATTGGCGG
LOC_Os03g24940
Os.48734.1.S1_s_at--301--5251Chr03:14199229..14199253 (25 bp)
GAATCGGCACAAGAACTCCGCGGAG
LOC_Os03g24940
Os.48734.1.S1_s_at--1039--5811Chr03:14197118..14197142 (25 bp)
GACCCGGGCAGTAACTCTTGATTAT
LOC_Os03g24940
Os.48734.1.S1_s_at--785--7591Chr03:14197091..14197115 (25 bp)
GGGCAAGGTTCAGACTCGTGATTAT
LOC_Os03g24940
Os.48734.1.S1_s_at--573--1391Chr03:14197053..14197077 (25 bp)
AGACTGAGACTTTACGGCCTGGGCC
LOC_Os03g24940
Os.48734.1.S1_s_at--1023--1151Chr03:14196962..14196986 (25 bp)
AGTCAAGCTGGCTGATGGCCCTGAA
LOC_Os03g24940
Os.48734.1.S1_s_at--182--271Chr03:14196897..14196921 (25 bp)
ATATGCTTGATCATCGTCAGCGTCT
LOC_Os03g24940
Os.48734.1.S1_s_at--73--5331Chr03:14196842..14196866 (25 bp)
GAAGGGTCTCAATACTGCCACTTTG
LOC_Os03g24940
Os.48734.1.S1_s_at--783--4391Chr03:14196827..14196850 (24 bp)
GCCACTTTGCTGTCCAATGAGGTTA
LOC_Os03g24940
Target Sequence 
TTTTCTTTCTTCTCGACGCAAACCAAGTAACCAACCCCTCCTCCTCGCAAGATCCCCCAAACCACGCGGGAAACCAGCCT
CAAGTTCGTCATCCCCATTGGCGGCGCCGAATCGGCACAAGAACTCCGCGGAGATCCGNGCGGGAGGTTTTTCATTCTAC
AGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGAGGCAAGGCTCAGACTGAGACT
TTACGGCCTGGGCCGTTACGTCCNGCAAACATCATCAGGGCTAAATTTCCTACCTACAAAAATGGTTTGAATGGTATAGT
AGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAACTGCGGATATGCTTGATCATC
GTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCCACTTTGCTGTCCAATGAGGTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48734.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis