Browse Element(s) Details


Os.48734.1.S1_at

Description gb:CR288034
DB_XREF= gi:44674600
DB_XREF=CR288034
CLONE=y698d04p5
TID=Os.48734.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48734 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_180245.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g249404/11proline-rich family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os03g24940Os.27135.1.A1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_x_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_s_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_at4/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24950Os.16999.1.A1_at11/113+14212011..14214838expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48734.1.S1_at--158--4671Chr03:14197143..14197162 (20 bp)
GCGGGAGGTTTTTCATTCTACAGAT
LOC_Os03g24940
Os.48734.1.S1_at--191--8031NONE
GGAGGTTTTTCATTCTACAGATGAC
NONE
Os.48734.1.S1_at--810--7871Chr03:14197137..14197161 (25 bp)
GGTTTTTCATTCTACAGATGACCCG
LOC_Os03g24940
Os.48734.1.S1_at--540--10351Chr03:14197134..14197158 (25 bp)
TTTTCATTCTACAGATGACCCGGGC
LOC_Os03g24940
Os.48734.1.S1_at--1009--10531Chr03:14197132..14197156 (25 bp)
TTCATTCTACAGATGACCCGGGCAG
LOC_Os03g24940
Os.48734.1.S1_at--1002--10851NONE
TTGGAGCGTGATATCTTCTTGAGAA
NONE
Os.48734.1.S1_at--557--5891NONE
GAGCGTGATATCTTCTTGAGAATCT
NONE
Os.48734.1.S1_at--1153--4651NONE
GCGTGATATCTTCTTGAGAATCTAA
NONE
Os.48734.1.S1_at--563--6511NONE
GATATCTTCTTGAGAATCTAAAGAC
NONE
Os.48734.1.S1_at--85--5251NONE
GAATCTAAAGACTGTTTAAGTCCTG
NONE
Os.48734.1.S1_at--59--2351NONE
AAAGACTGTTTAAGTCCTGAGAGGC
NONE
Target Sequence 
GCGGGAGGTTTTTCATTCTACAGATGACCCGGGCAGTAACTCTTGATTATGGGGGCAAGGTTCAGACTCGTGATTATGGA
GGCAAGGCTCAGACTGAGACTTTACGGCCTGGGCCGTTACGTCCNGCAAACATCATCAGGGCTAAATTTCCTACCTACAA
AAATGGTTTGAATGGTATAGTAGTCAAGCTGGCTGATGGCCCTGAAATGCCATCTCTCAAGGAGACTGTCACCAAGGAAA
CTGCGGATATGCTTGATCATCGTCAGCGTCTGTCAGTCCGTGAGCTTGCAATGAAGTTTGAGAAGGGTCTCAATACTGCC
ACTTTGCTGTCCAATGAGGTTAAATGGAGACCAGTGGCTTTGTTGGAGCGTGATATCTTCTTGAGAATCTAAAGACTGTT
TAAGTCCTGAGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis