Browse Element(s) Details


OsAffx.28418.1.S1_at

Description gb:NM_186677.1
DB_XREF= gi:34900439
TID=OsAffx.28418.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OSJNBa0066H10.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1245011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12410Os.46012.2.S1_x_at8/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.46012.3.S1_x_at7/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.27088.1.A1_x_at5/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.54691.1.S1_x_at1/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12420OsAffx.10222.1.S1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.45902.1.A1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.10263.1.S1_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.46808.2.S1_x_at1/117+7082910..7085643hypothetical protein
LOC_Os07g12430OsAffx.5300.2.S1_at11/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.5300.1.S1_s_at10/117+7090152..7091812hypothetical protein
LOC_Os07g12430Os.27135.1.A1_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.17065.1.A1_s_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12440OsAffx.28417.1.S1_at11/117+7093829..7094120hypothetical protein
LOC_Os07g12450OsAffx.28418.1.S1_at11/117+7095029..7095562hypothetical protein
LOC_Os07g12460OsAffx.10207.1.S1_x_at6/117+7104578..7104853hypothetical protein
LOC_Os07g12470Os.34312.1.S1_at11/117+7105271..7108429expressed protein
LOC_Os07g12480OsAffx.5301.1.S1_at11/117+7109061..7111043Protein kinase domain containing protein
LOC_Os07g12490Os.20010.1.S1_at9/117+7119023..7124714KH domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28418.1.S1_at--462--8431Chr07:7095449..7095473 (25 bp)
GGCCTTGGCGGCTCAGTTAGCCGAT
LOC_Os07g12450
OsAffx.28418.1.S1_at--521--9631Chr07:7095437..7095461 (25 bp)
TCAGTTAGCCGATCCAACGGCTTTC
LOC_Os07g12450
OsAffx.28418.1.S1_at--120--6371Chr07:7095427..7095451 (25 bp)
GATCCAACGGCTTTCCTTGAGGAGG
LOC_Os07g12450
OsAffx.28418.1.S1_at--1100--9951Chr07:7095391..7095415 (25 bp)
TACCGGCATGCGGTGACCTTGCGTC
LOC_Os07g12450
OsAffx.28418.1.S1_at--539--5151Chr07:7095332..7095356 (25 bp)
GCAACATTCAGTGGTGACGCTGCAA
LOC_Os07g12450
OsAffx.28418.1.S1_at--211--9291Chr07:7095245..7095269 (25 bp)
TCCGGGAGTGGCAGTGCATCTTCGA
LOC_Os07g12450
OsAffx.28418.1.S1_at--341--6131Chr07:7095240..7095264 (25 bp)
GAGTGGCAGTGCATCTTCGACCTCG
LOC_Os07g12450
OsAffx.28418.1.S1_at--658--6231Chr07:7095156..7095180 (25 bp)
GATGGCGATTTCCACTTCGACAGCG
LOC_Os07g12450
OsAffx.28418.1.S1_at--607--2051Chr07:7095143..7095167 (25 bp)
ACTTCGACAGCGATACAACTCGGTA
LOC_Os07g12450
OsAffx.28418.1.S1_at--171--6471Chr07:7095132..7095156 (25 bp)
GATACAACTCGGTACAGGCATCTGA
LOC_Os07g12450
OsAffx.28418.1.S1_at--432--931Chr07:7095117..7095141 (25 bp)
AGGCATCTGATTTTCAGGCGCTATT
LOC_Os07g12450
Target Sequence 
GGCCTTGGCGGCTCAGTTAGCCGATCCAACGGCTTTCCTTGAGGAGGCCGAACCATTATACCGGCATGCGGTGACCTTGC
GTCCGCGAGGGCGTGTCTTCAAGCAGCACGGATGGGGGCAACATTCAGTGGTGACGCTGCAACCACGCGGGGACGGCGTG
ACTCGTGGCGAGGCGCTCATGTTTCCTCTTCCGGCGGTGCCAAGTCCGGGAGTGGCAGTGCATCTTCGACCTCGCCGCTG
GGACTGGCGATGGCGCCGTTGCCATTGGCGCCCTCAACGGTGGCGGAGAAGACGATGGCGATTTCCACTTCGACAGCGAT
ACAACTCGGTACAGGCATCTGATTTTCAGGCGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis