Browse Element(s) Details


OsAffx.5301.1.S1_at

Description tigr:9635.m01226
TID=OsAffx.5301.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1248011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12420OsAffx.10222.1.S1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.45902.1.A1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.10263.1.S1_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.46808.2.S1_x_at1/117+7082910..7085643hypothetical protein
LOC_Os07g12430OsAffx.5300.2.S1_at11/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.5300.1.S1_s_at10/117+7090152..7091812hypothetical protein
LOC_Os07g12430Os.27135.1.A1_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.17065.1.A1_s_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12440OsAffx.28417.1.S1_at11/117+7093829..7094120hypothetical protein
LOC_Os07g12450OsAffx.28418.1.S1_at11/117+7095029..7095562hypothetical protein
LOC_Os07g12460OsAffx.10207.1.S1_x_at6/117+7104578..7104853hypothetical protein
LOC_Os07g12470Os.34312.1.S1_at11/117+7105271..7108429expressed protein
LOC_Os07g12480OsAffx.5301.1.S1_at11/117+7109061..7111043Protein kinase domain containing protein
LOC_Os07g12490Os.20010.1.S1_at9/117+7119023..7124714KH domain-containing protein, putative, expressed
LOC_Os07g12500Os.35344.18.S1_x_at10/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500Os.35344.3.S1_x_at9/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500OsAffx.22940.5.S1_x_at3/117+7129728..7135775transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5301.1.S1_at--937--9111Chr07:7109635..7109659 (25 bp)
TGCTGTCGGAGTCCGGCGCGGCGAA
LOC_Os07g12480
OsAffx.5301.1.S1_at--697--7711Chr07:7109596..7109620 (25 bp)
GGGTGTCGCGGATCGTGCCCGAGGG
LOC_Os07g12480
OsAffx.5301.1.S1_at--657--1911Chr07:7109563..7109587 (25 bp)
ACGTGTCGACGGAGGTGCGCGGCAC
LOC_Os07g12480
OsAffx.5301.1.S1_at--182--7291Chr07:7109265..7109289 (25 bp)
GTGCCGGTGCGTGCGCCCATACAAG
LOC_Os07g12480
OsAffx.5301.1.S1_at--630--7291Chr07:7109259..7109283 (25 bp)
GTGCGTGCGCCCATACAAGCACGAG
LOC_Os07g12480
OsAffx.5301.1.S1_at--327--631Chr07:7109195..7109219 (25 bp)
ATGCTCGCCGACTATACCGCACGAG
LOC_Os07g12480
OsAffx.5301.1.S1_at--129--8391Chr07:7109165..7109189 (25 bp)
GGCGCCGACCGATCAGAGGCCTCGA
LOC_Os07g12480
OsAffx.5301.1.S1_at--384--4051Chr07:7109156..7109180 (25 bp)
CGATCAGAGGCCTCGACGTCATCAT
LOC_Os07g12480
OsAffx.5301.1.S1_at--121--3551Chr07:7109101..7109125 (25 bp)
CATCGACATCGTCATCCGTGGCGAA
LOC_Os07g12480
OsAffx.5301.1.S1_at--139--511Chr07:7109094..7109118 (25 bp)
ATCGTCATCCGTGGCGAACACCGAA
LOC_Os07g12480
OsAffx.5301.1.S1_at--457--7131Chr07:7109091..7109115 (25 bp)
GTCATCCGTGGCGAACACCGAAGCG
LOC_Os07g12480
Target Sequence 
TGCTGTCGGAGTCCGGCGCGGCGAAGCTGTCGGACTTCGGGGTGTCGCGGATCGTGCCCGAGGGCGGGACGCACGTGTCG
ACGGAGGTGCGCGGCACGCGCGGGTACGTCGACCCGGAGAGCTTCTCGGCGGGGCACGTCTCGGAGGCCGGCGACGTCTA
CAGCTTCGGCGTCGTGCTGCTCGAGCTCGCCACGGGGATGCGCGCCGTCGTGCCCACGCCGTCGGGCGGCGCCGAGTCCA
TCGTGCACGCCGCGCACTGGGCCGTCGCCCAGGCCGGCGGCGAGGCCGGCGCCGCCGCGGAGTCCATGGTGGACGAGCGC
CTCGGCGCCGACTGGGACAGGCCCACCGTGCGCGCCGTGTTCGCGCTCGCGTGCCGGTGCGTGCGCCCATACAAGCACGA
GCGCCCCGCGATGGGCGAGGTGCTCGCCGAGCTCAAGGCCATGCTCGCCGACTATACCGCACGAGGCGGCGGCGCCGACC
GATCAGAGGCCTCGACGTCATCATCCACCGCCACCCCGGACCTGGCGTCGCTCCCATCGACATCGTCATCCGTGGCGAAC
ACCGAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis