Browse Element(s) Details


Os.28229.1.S1_at

Description gb:AK070946.1
DB_XREF= gi:32980969
TID=Os.28229.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) GDSL-motif lipasehydrolase-like protein (P0042A10.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074K21, full insert sequence.
FL= gb:AK070946.1 gb:AK104682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g527705/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52760OsAffx.2319.1.S1_at11/111+30678677..30685105expressed protein
LOC_Os01g52760Os.33039.1.S1_at10/111+30678677..30685105expressed protein
LOC_Os01g52760Os.54724.1.S1_at3/111+30678677..30685105expressed protein
LOC_Os01g52770Os.28229.2.S1_x_at11/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.28229.1.S1_at5/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.51561.1.S1_x_at1/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28229.1.S1_at--747--11Chr01:30690713..30690737 (25 bp)
ATTGGTGTCTTCCTAGTCGTTTTCA
LOC_Os01g52770
Os.28229.1.S1_at--1040--10031Chr01:30690726..30690750 (25 bp)
TAGTCGTTTTCAACCTACTGCGTGC
LOC_Os01g52770
Os.28229.1.S1_at--741--9911Chr01:30690741..30690765 (25 bp)
TACTGCGTGCCTGGAATCTTGATGG
LOC_Os01g52770
Os.28229.1.S1_at--193--3491Chr01:30690782..30690806 (25 bp)
CAGGCATTCGGTTCTTCGGTTTATA
LOC_Os01g52770
Os.28229.1.S1_at--66--6291Chr01:30690900..30690924 (25 bp)
GATGTATTCCTCATTCTTTGTATGC
LOC_Os01g52770
Os.28229.1.S1_at--1049--10071Chr01:30690969..30690993 (25 bp)
TAGGAGAGGTATCTTTGCCATTGCC
NONE
Os.28229.1.S1_at--486--8251Chr01:30691070..30691094 (25 bp)
GGCAGCCATTACACAATTCCATTTA
NONE
Os.28229.1.S1_at--571--3791Chr01:30691098..30691122 (25 bp)
CTCCCCGTTGGAAAGAATGCCTTCA
NONE
Os.28229.1.S1_at--700--1211Chr01:30691122..30691146 (25 bp)
AGTTCACCACAATCTTAACCATCGT
NONE
Os.28229.1.S1_at--126--7571Chr01:30691316..30691340 (25 bp)
GGGCCGTGCGACTCGATGAATCGTT
NONE
Os.28229.1.S1_at--462--651Chr01:30691331..30691355 (25 bp)
ATGAATCGTTCGACGGACTTGCGCG
NONE
Target Sequence 
ATTGGTGTCTTCCTAGTCGTTTTCAACCTACTGCGTGCCTGGAATCTTGATGGGTGAGAGAGGAGAGAACAGGCATTCGG
TTCTTCGGTTTATAGATGTGTTCAGTGCTGGAGAGAGCNCAGATAAATATGTTCAGACAAGACATATTTTAGATTCGGAG
ATTTTTCATACAACTGTACACCGAATAGATGTATTCCTCATTCTTTGTATGCATGGCAACCTNTTTCTCAAGTANNNAAN
NANNNNNNNANNNTTGTAGGAGAGGTATCTTTGCCATTGCCAAGCCAACGAACATTTCAGACACACGGCACACACAAGTA
CAGACGAGGTGAAGTGAGCTGCAAGCCTGCAATACACGGCAGCCATTACACAATTCCATTTACTTCTCCCCGTTGGAAAG
AATGCCTTCAGTTCACCACAATCTTAACCATCGTTACGCTCTCTTTGCCTCCTCTTCAGCAGCTCGGATGATCTTGTCGA
GGGCGTCAGGGCCGTGCGACTCGATGAATCGTTCGACGGACTTGCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis