Browse Element(s) Details


OsAffx.2319.1.S1_at

Description tigr:9629.m05127
TID=OsAffx.2319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5276011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52760OsAffx.2319.1.S1_at11/111+30678677..30685105expressed protein
LOC_Os01g52760Os.33039.1.S1_at10/111+30678677..30685105expressed protein
LOC_Os01g52760Os.54724.1.S1_at3/111+30678677..30685105expressed protein
LOC_Os01g52770Os.28229.2.S1_x_at11/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.28229.1.S1_at5/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.51561.1.S1_x_at1/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2319.1.S1_at--533--6731Chr01:30684623..30684647 (25 bp)
GTTCTACAAGACTTCACTGCTGGAT
LOC_Os01g52760
OsAffx.2319.1.S1_at--864--6471Chr01:30684645..30684669 (25 bp)
GATACAGATACTTTGAGCCGAGCAT
LOC_Os01g52760
OsAffx.2319.1.S1_at--13--131Chr01:30684676..30684700 (25 bp)
ATTAACATCAGTCTCCATCAGTTCC
LOC_Os01g52760
OsAffx.2319.1.S1_at--920--10471Chr01:30684732..30684756 (25 bp)
TTAAATGTGCCCCATGTACAGCTCA
LOC_Os01g52760
OsAffx.2319.1.S1_at--256--8111Chr01:30684757..30684781 (25 bp)
GGACGTCTCCAAACTTTGTTAGTCT
LOC_Os01g52760
OsAffx.2319.1.S1_at--781--2271Chr01:30684814..30684838 (25 bp)
AAATCCCGATGGTTACTGTATTGTA
LOC_Os01g52760
OsAffx.2319.1.S1_at--272--51Chr01:30684833..30684857 (25 bp)
ATTGTACAATTGATGCTCCGCTGCC
LOC_Os01g52760
OsAffx.2319.1.S1_at--253--10651Chr01:30684867..30684891 (25 bp)
TTCCCTTTTATTGTCATGCCCTAGA
LOC_Os01g52760
OsAffx.2319.1.S1_at--413--5331Chr01:30684950..30684974 (25 bp)
GAAGTACTTGGCCACTTGGGTTGTT
LOC_Os01g52760
OsAffx.2319.1.S1_at--688--10711Chr01:30684973..30684997 (25 bp)
TTGCTTGGTCTGATTGGTTAACACT
LOC_Os01g52760
OsAffx.2319.1.S1_at--134--7571Chr01:30685042..30685066 (25 bp)
GGGCCCTGCTGTGAAGTTATCCTTA
LOC_Os01g52760
Target Sequence 
GTTCTACAAGACTTCACTGCTGGATACAGATACTTTGAGCCGAGCATTGTTTAATTAACATCAGTCTCCATCAGTTCCCA
ACTTTTGCTGGTAATGCACCAAGTGAAACTTAAATGTGCCCCATGTACAGCTCAGGACGTCTCCAAACTTTGTTAGTCTT
GATTAATCTATAATAAAGTATCATAAATATAAAATCCCGATGGTTACTGTATTGTACAATTGATGCTCCGCTGCCACCTT
TGTTTTCCCTTTTATTGTCATGCCCTAGACTTCTAGTGTTAGAATGTGTTGCGGTAGTAAACCACAAGTTCAGTCAAAAA
CTTCGGCGAAGTACTTGGCCACTTGGGTTGTTGCTTGGTCTGATTGGTTAACACTAGATTTTGTACAAAATTCAGGCCCA
ACCCCATGCTTATCTCTCTGGGCCCTGCTGTGAAGTTATCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis