Browse Element(s) Details


Os.41805.1.S1_at

Description gb:AU031566
DB_XREF= gi:3767456
DB_XREF=AU031566
CLONE=E61861_1A
TID=Os.41805.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.34 (P0042A10.34), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5278011/11TB2/DP1, HVA22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed
LOC_Os01g52760OsAffx.2319.1.S1_at11/111+30678677..30685105expressed protein
LOC_Os01g52760Os.33039.1.S1_at10/111+30678677..30685105expressed protein
LOC_Os01g52760Os.54724.1.S1_at3/111+30678677..30685105expressed protein
LOC_Os01g52770Os.28229.2.S1_x_at11/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.28229.1.S1_at5/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.51561.1.S1_x_at1/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41805.1.S1_at--471--5571Chr01:30691525..30691643 (25 bp)
GAAAGTTCTCCAATGGTTTCCTCTG
LOC_Os01g52780
Os.41805.1.S1_at--664--7871Chr01:30691511..30691535 (25 bp)
GGTTTCCTCTGTGGCCGTACATGAA
LOC_Os01g52780
Os.41805.1.S1_at--303--2571Chr01:30691449..30691473 (25 bp)
AACGGCGCGGCCTACATCTACGAGA
LOC_Os01g52780
Os.41805.1.S1_at--43--1291Chr01:30691403..30691427 (25 bp)
AGATCGGCCAGTACGTGAGCCCCAA
LOC_Os01g52780
Os.41805.1.S1_at--1016--891Chr01:30691358..30691382 (25 bp)
AGGCGCTCCAGATGATGAGCCTCGA
LOC_Os01g52780
Os.41805.1.S1_at--1142--4551Chr01:30691332..30691356 (25 bp)
GCGCGCAAGTCCGTCGAACGATTCA
LOC_Os01g52780
Os.41805.1.S1_at--745--5451Chr01:30691317..30691341 (25 bp)
GAACGATTCATCGAGTCGCACGGCC
LOC_Os01g52780
Os.41805.1.S1_at--56--4111Chr01:30691287..30691306 (20 bp)
CGACAAGATCATCCGAGCTGCTGAA
LOC_Os01g52780
Os.41805.1.S1_at--882--8211Chr01:30691065..30691089 (25 bp)
GGAATTGTGTAATGGCTGCCGTGTA
LOC_Os01g52780
Os.41805.1.S1_at--1007--1751Chr01:30691018..30691042 (25 bp)
ACCTCGTCTGTACTTGTGTGTGCCG
LOC_Os01g52780
Os.41805.1.S1_at--327--851Chr01:30690965..30690989 (25 bp)
ATGGCAAAGATACCTCTCCTACAAA
LOC_Os01g52780
Target Sequence 
GAAAGTTCTCCAATGGTTTCCTCTGTGGCCGTACATGAAGCTCCTCTTCTGCTGTTGGCTGGTGCTGCCAATCTTCAACG
GCGCGGCCTACATCTACGAGACCCACGTGCGCCGCTACTTCAAGATCGGCCAGTACGTGAGCCCCAACTACAACGAACGG
CAGCGGAAGGCGCTCCAGATGATGAGCCTCGACGCGCGCAAGTCCGTCGAACGATTCATCGAGTCGCACGGCCCTGACGC
CCTCGACAAGATCATCCGAGCTGCTGAAGAGGAGGCAAAGAGAGCGTAACGATGGTTANGATTGTGGTGAACTGAAGGCA
TTCTTTCCAACGGGGANGAAGTANATGGAATTGTGTAATGGCTGCCGTGTATTGCAGGCTTGCAGCTCACTTCACCTCGT
CTGTACTTGTGTGTGCCGTGTGTCTGANATGNNCGTTGGCTTGGCAATGGCAAAGATACCTCTCCTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis