Browse Element(s) Details


Os.32160.1.S1_a_at

Description gb:AK068181.1
DB_XREF= gi:32978199
TID=Os.32160.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.22 (P0042A10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134I17, full insert sequence.
FL= gb:AK105758.1 gb:AK068181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5271011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52690Os.23219.1.S1_at11/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52690Os.23219.2.S1_x_at10/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein
LOC_Os01g52710Os.32160.1.S1_a_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.2.S1_x_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.1.S1_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52730Os.19385.1.S2_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.1.S1_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.2.S1_at2/111+30649597..30651931expressed protein
LOC_Os01g52740NANA1+30667159..30668442expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32160.1.S1_a_at--810--1771Chr01:30642087..30642111 (25 bp)
ACCGGGAGTCGGGATTCAGGCTGTG
LOC_Os01g52710
Os.32160.1.S1_a_at--848--9631Chr01:30642102..30642126 (25 bp)
TCAGGCTGTGGAAGATGGGCTCGCT
LOC_Os01g52710
Os.32160.1.S1_a_at--405--4731Chr01:30642106..30642130 (25 bp)
GCTGTGGAAGATGGGCTCGCTGCCG
LOC_Os01g52710
Os.32160.1.S1_a_at--24--9171Chr01:30642126..30642150 (25 bp)
TGCCGCCGGCGCTGATAGCGTTCGA
LOC_Os01g52710
Os.32160.1.S1_a_at--1124--6451Chr01:30642139..30642163 (25 bp)
GATAGCGTTCGACGGCCGGGTGCAG
LOC_Os01g52710
Os.32160.1.S1_a_at--1018--1591Chr01:30642222..30642246 (25 bp)
AGCTGCAGCGCTCAGCCGTGCTGCA
LOC_Os01g52710
Os.32160.1.S1_a_at--735--1651Chr01:30642228..30642252 (25 bp)
AGCGCTCAGCCGTGCTGCATTTCAG
LOC_Os01g52710
Os.32160.1.S1_a_at--393--9671Chr01:30642233..30642257 (25 bp)
TCAGCCGTGCTGCATTTCAGCGGGC
LOC_Os01g52710
Os.32160.1.S1_a_at--222--9111Chr01:30642240..30642264 (25 bp)
TGCTGCATTTCAGCGGGCCGAGGAA
LOC_Os01g52710
Os.32160.1.S1_a_at--124--2671Chr01:30642263..30642287 (25 bp)
AAGCCCTGGCTGGAGGTCGCGTTCC
LOC_Os01g52710
Os.32160.1.S1_a_at--443--1591Chr01:30642291..30642315 (25 bp)
AGCTCCGGGAACTATGGCTCGGCCA
LOC_Os01g52710
Target Sequence 
ACCGGGAGTCGGGATTCAGGCTGTGGAAGATGGGCTCGCTGCCGCCGGCGCTGATAGCGTTCGACGGCCGGGTGCAGGCG
GTGGAGCCGCGGTGGCATCTGCGGGGCCTCGGCTGGCACACGCCGGACGGCGAGCAGCTGCAGCGCTCAGCCGTGCTGCA
TTTCAGCGGGCCGAGGAAGCCCTGGCTGGAGGTCGCGTTCCCGGAGCTCCGGGAACTATGGCTCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32160.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis