Browse Element(s) Details


Os.32160.2.S1_x_at

Description gb:NM_191851.1
DB_XREF= gi:34910785
GEN=P0042A10.22
TID=Os.32160.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.22 (P0042A10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0042A10.22 (P0042A10.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5271011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52690Os.23219.1.S1_at11/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52690Os.23219.2.S1_x_at10/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein
LOC_Os01g52710Os.32160.1.S1_a_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.2.S1_x_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.1.S1_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52730Os.19385.1.S2_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.1.S1_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.2.S1_at2/111+30649597..30651931expressed protein
LOC_Os01g52740NANA1+30667159..30668442expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32160.2.S1_x_at--947--6071Chr01:30641461..30641485 (25 bp)
GAGTATCACCAGTGTGACGCGTCAG
LOC_Os01g52710
Os.32160.2.S1_x_at--127--5811Chr01:30641476..30641500 (25 bp)
GACGCGTCAGTTGTCAGGGAATACA
LOC_Os01g52710
Os.32160.2.S1_x_at--956--9511Chr01:30641531..30641555 (25 bp)
TCTCTCTTCTCAACTACCTCAAGAT
LOC_Os01g52710
Os.32160.2.S1_x_at--925--6131Chr01:30641692..30641716 (25 bp)
GAGGGTGATACTTCTTGACGACGAC
LOC_Os01g52710
Os.32160.2.S1_x_at--839--5972Chr01:30641765..30641789 (25 bp)
GAGAACATCATAGGCGCCGTCGGCG
LOC_Os01g52710
Os.32160.2.S1_x_at--250--7171Chr01:30641816..30641840 (25 bp)
GTCTGCATCGAGAAGACGCTCGGTG
LOC_Os01g52710
Os.32160.2.S1_x_at--1070--5211Chr01:30641848..30641872 (25 bp)
GAATTTCACTGACCCCGAAGTGTCA
LOC_Os01g52710
Os.32160.2.S1_x_at--653--5311Chr01:30641864..30642098 (25 bp)
GAAGTGTCAAACAACCGGGAGTCGG
LOC_Os01g52710
Os.32160.2.S1_x_at--223--9111Chr01:30642240..30642264 (25 bp)
TGCTGCATTTCAGCGGGCCGAGGAA
LOC_Os01g52710
Os.32160.2.S1_x_at--125--2671Chr01:30642263..30642287 (25 bp)
AAGCCCTGGCTGGAGGTCGCGTTCC
LOC_Os01g52710
Os.32160.2.S1_x_at--442--1591Chr01:30642291..30642315 (25 bp)
AGCTCCGGGAACTATGGCTCGGCCA
LOC_Os01g52710
Target Sequence 
GAGTATCACCAGTGTGACGCGTCAGTTGTCAGGGAATACAGGAGGCTCGAAGCCTCCAAGCCAAGCACGTTCTCTCTTCT
CAACTACCTCAAGATCCACCTCCCAGAGTTCTTCCCGGAGCTCGGGAGGGTGATACTTCTTGACGACGACGTCGTGGTGC
GAAAGGACCTGACCGGGCTGTGGGAGCAGCACCTCGGCGAGAACATCATAGGCGCCGTCGGCGGGCACAACCCCGGCGAA
GACGGGGTCGTCTGCATCGAGAAGACGCTCGGTGATCACCTGAATTTCACTGACCCCGAAGTGTCAAACAACCGGGAGTC
GGGATTCAGGCTGTGGAAGATGGGCTCGCTGCCGCCGGCGCTGATAGCGTTCGACGGCCGGGTGCAGGCGGTGGAGCCGC
GGTGGCATCTGCGGGGCCTCGGCTGGCACACGCCGGACGGCGAGCAGCTGCAGCGCTCAGCCGTGCTGCATTTCAGCGGG
CCGAGGAAGCCCTGGCTGGAGGTCGCGTTCCCGGAGCTCCGGGAACTATGGCTCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32160.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis