Browse Element(s) Details


Os.10358.1.A1_at

Description gb:AK111282.1
DB_XREF= gi:32996491
TID=Os.10358.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.10358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0004A06.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-H05, full insert sequence.
FL= gb:AK111282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0427011/11Jacalin-like lectin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04240NANA10+1958414..1961373retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g04250OsAffx.14826.1.S1_at1/1110+1964704..1967815Transposable element protein, putative, Retrotrans_gag
LOC_Os10g04260OsAffx.30273.1.S1_at11/1110+1971335..1973334hypothetical protein
LOC_Os10g04270Os.10358.1.A1_at11/1110+1982985..1983982Jacalin-like lectin domain containing protein, expressed
LOC_Os10g04280Os.23219.2.S1_x_at1/1110+1995147..1996028hypothetical protein
LOC_Os10g04290Os.46055.1.S1_at11/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04290Os.46055.2.S1_x_at11/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04290Os.10827.1.S1_x_at9/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g04290OsAffx.18122.1.S1_x_at1/1110+2003103..2016533transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009615biological_processresponse to virus
GO:0005529molecular_functionsugar binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10358.1.A1_at--340--10451Chr10:1983619..1983643 (25 bp)
TTAGCTTCTCCTACAGGGACCGCGA
LOC_Os10g04270
Os.10358.1.A1_at--751--1851Chr10:1983442..1983464 (23 bp)
ACGATAAATCTTGGCCCGTCGGAGT
LOC_Os10g04270
Os.10358.1.A1_at--437--7631Chr10:1983399..1983423 (25 bp)
GGGAGTACGGATCCTACTACGGCCA
LOC_Os10g04270
Os.10358.1.A1_at--858--3951Chr10:1983341..1983362 (22 bp)
CGGACGCCATGGACCCTTTGGAGAA
LOC_Os10g04270
Os.10358.1.A1_at--500--1451Chr10:1983317..1983338 (22 bp)
AGAAGTGGACACATCCGGCTGGGAT
LOC_Os10g04270
Os.10358.1.A1_at--36--511Chr10:1983214..1983238 (25 bp)
ATCGGTGTCTACGTCAGGCCATTCT
LOC_Os10g04270
Os.10358.1.A1_at--1070--8431Chr10:1983198..1983222 (25 bp)
GGCCATTCTGAATTTCTCATCGTCG
LOC_Os10g04270
Os.10358.1.A1_at--487--1291Chr10:1983168..1983192 (25 bp)
AGATGCCTGCCCTGGATGCTGTGAA
LOC_Os10g04270
Os.10358.1.A1_at--117--3991Chr10:1983116..1983140 (25 bp)
CGTTAATTATAATGCCGGGCTGCGT
LOC_Os10g04270
Os.10358.1.A1_at--627--7571Chr10:1983088..1983112 (25 bp)
GGGCTTTCCCATTTATTTTGCGTAG
LOC_Os10g04270
Os.10358.1.A1_at--580--2811Chr10:1983017..1983041 (25 bp)
AAGTTGGAACTGACCTTTGCTTTCA
LOC_Os10g04270
Target Sequence 
TTAGCTTCTCCTACAGGGACCGCGAGAAGCTACCCCACACCGCCGGACCCTGGGGCGGCAGAGGCGGCCAGGAAATCACG
ATAAATCTTGGCCCGTCGGAGTTCGTGACGGAAGTTCACGGGGAGTACGGATCCTACTACGGCCACAACAGCATAGCCAA
CCTCACGTTCGTCACCAACCGCGGACGCCATGGACCCTTTGGAGAAGTGGACACATCCGGCTGGGATCGCTTCAGCGTTC
CCATCAAGAACAACAGCAGCATCGTCGGCTTCTTTGCCCGCACCGGCGATTCCTACCTCAGCGCCATCGGTGTCTACGTC
AGGCCATTCTGAATTTCTCATCGTCGTCAACAGATGCCTGCCCTGGATGCTGTGAATGTATCGCTGTAAAATATGAATAT
CCGCGTTAATTATAATGCCGGGCTGCGTCCAGGGCTTTCCCATTTATTTTGCGTAGGCTGTGTGTCTGGTTGAAGTTGGA
ACTGATCTATTGTAGTACATGTAAGTTGGAACTGACCTTTGCTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10358.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis