Browse Element(s) Details


OsAffx.18131.1.S1_at

Description tigr:9638.m00365
TID=OsAffx.18131.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0456011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04510OsAffx.18129.2.S1_at11/1110+2127512..2128549expressed protein
LOC_Os10g04520Os.19044.1.S1_at9/1110+2131120..2132645expressed protein
LOC_Os10g04530OsAffx.20763.1.S1_at11/1110+2132830..2134112hypothetical protein
LOC_Os10g04540Os.19044.1.S1_at2/1110+2135413..2136864hypothetical protein
LOC_Os10g04540Os.46873.3.S1_at1/1110+2135413..2136864hypothetical protein
LOC_Os10g04550OsAffx.18131.2.S1_at11/1110+2142237..2143126hypothetical protein
LOC_Os10g04560OsAffx.18131.1.S1_at11/1110+2147271..2148713hypothetical protein
LOC_Os10g04560OsAffx.18131.2.S1_at1/1110+2147271..2148713hypothetical protein
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein
LOC_Os10g04580Os.46527.1.S1_at11/1110+2162756..2167342GTP-binding protein, putative, expressed
LOC_Os10g04590Os.46313.2.S1_x_at11/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04590Os.46313.1.S1_at10/1110+2169440..2172683F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18131.1.S1_at--244--10191Chr10:2148248..2148272 (25 bp)
TATAGCAAATGAGCTGTCAGTGTTG
LOC_Os10g04560
OsAffx.18131.1.S1_at--645--4731Chr10:2148260..2148284 (25 bp)
GCTGTCAGTGTTGCTCGGTGGCTCA
LOC_Os10g04560
OsAffx.18131.1.S1_at--900--9431Chr10:2148274..2148298 (25 bp)
TCGGTGGCTCATTCGTCGCAGTGAA
LOC_Os10g04560
OsAffx.18131.1.S1_at--923--3571Chr10:2148283..2148307 (25 bp)
CATTCGTCGCAGTGAATGTGTTTGC
LOC_Os10g04560
OsAffx.18131.1.S1_at--512--791Chr10:2148298..2148322 (25 bp)
ATGTGTTTGCGGATATATTCAGAAA
LOC_Os10g04560
OsAffx.18131.1.S1_at--1150--5831Chr10:2148390..2148414 (25 bp)
GAGTTCAAAGAACACCCCAAGCTTC
LOC_Os10g04560
OsAffx.18131.1.S1_at--667--1751Chr10:2148475..2148499 (25 bp)
ACCTCATGCCTCCTAATTGTGAAGA
LOC_Os10g04560
OsAffx.18131.1.S1_at--797--1411Chr10:2148497..2148521 (25 bp)
AGACAATCAGTCAAAGAGGAGCTTA
LOC_Os10g04560
OsAffx.18131.1.S1_at--980--1112Chr10:2148537..2148561 (25 bp)
AGTGACTTCATAGCTGACTCTGTTG
LOC_Os10g04560
OsAffx.18131.1.S1_at--791--4752Chr10:2148549..2148573 (25 bp)
GCTGACTCTGTTGTTATACCAAAGG
LOC_Os10g04560
OsAffx.18131.1.S1_at--81--5211Chr10:2148659..2148683 (25 bp)
GAATTTTCATCATACAGAAGTACCT
LOC_Os10g04560
Target Sequence 
TATAGCAAATGAGCTGTCAGTGTTGCTCGGTGGCTCATTCGTCGCAGTGAATGTGTTTGCGGATATATTCAGAAAGAATC
ATGTTCACTTATGGCTCCATGTCTTGAAAAAATACAGAAAAATGATTCGGAAAAATTTCTCAGAGTTCAAAGAACACCCC
AAGCTTCTTTTGGACAAAGAACATCATATAGATATAACCAAACTTGCATCGTCATCCTCTCCACTTCACCTCATGCCTCC
TAATTGTGAAGACAATCAGTCAAAGAGGAGCTTAACCAAGGTGATGTTCAGTGACTTCATAGCTGACTCTGTTGTTATAC
CAAAGGAGAACTTTGAGTTAGTCACATGGGAATCGCGGATACCCCCTTATAGAAAGTTTGTCAACATTGTTTCAAACTAT
GATGATGAGATGAATTTTCATCATACAGAAGTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis