Browse Element(s) Details


Os.46313.2.S1_x_at

Description gb:NM_194763.1
DB_XREF= gi:37530885
TID=Os.46313.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0013J21.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0013J21.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0459011/11F-box domain containing protein, expressed
LOC_Os10g046101/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04560OsAffx.18131.1.S1_at11/1110+2147271..2148713hypothetical protein
LOC_Os10g04560OsAffx.18131.2.S1_at1/1110+2147271..2148713hypothetical protein
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein
LOC_Os10g04580Os.46527.1.S1_at11/1110+2162756..2167342GTP-binding protein, putative, expressed
LOC_Os10g04590Os.46313.2.S1_x_at11/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04590Os.46313.1.S1_at10/1110+2169440..2172683F-box domain containing protein, expressed
LOC_Os10g04600Os.49314.1.S1_at11/1110+2176102..2178745F-box domain containing protein, expressed
LOC_Os10g04610Os.46460.1.S1_at11/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04610Os.46313.2.S1_x_at1/1110+2180707..2183115F-box domain containing protein, expressed
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04630NANA10+2196166..2197055expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46313.2.S1_x_at--1032--4771Chr10:2170415..2170439 (25 bp)
GCTGCGTCTACTGGCTGACCAGATT
LOC_Os10g04590
Os.46313.2.S1_x_at--570--5851Chr10:2170431..2170455 (25 bp)
GACCAGATTCTTGGACAGATTGCTC
LOC_Os10g04590
Os.46313.2.S1_x_at--160--2131Chr10:2170445..2170469 (25 bp)
ACAGATTGCTCATCCTGGACACCGA
LOC_Os10g04590
Os.46313.2.S1_x_at--63--3911Chr10:2170459..2170483 (25 bp)
CTGGACACCGACGAGATGGAATTGT
LOC_Os10g04590
Os.46313.2.S1_x_at--458--31Chr10:2170479..2170503 (25 bp)
ATTGTCCATGTTTGATAACTTCCCC
LOC_Os10g04590
Os.46313.2.S1_x_at--596--10251Chr10:2170516..2170540 (25 bp)
TTTGTACTGAATCACACCACTGCGG
LOC_Os10g04590
Os.46313.2.S1_x_at--614--5491Chr10:2170636..2170660 (25 bp)
GAACAGTGGCGGCATGACAAGACTA
LOC_Os10g04590
Os.46313.2.S1_x_at--615--4992Chr10:2170647..2170671 (25 bp)
GCATGACAAGACTATCCCATTGCTC
LOC_Os10g04590
Os.46313.2.S1_x_at--1006--10711Chr10:2170666..2170690 (25 bp)
TTGCTCCCTGGCTACAGTATTTGGA
LOC_Os10g04590
Os.46313.2.S1_x_at--269--5611Chr10:2170836..2170860 (25 bp)
GACAATCTACCAAGCAAGGAACTCT
LOC_Os10g04590
Os.46313.2.S1_x_at--25--5191Chr10:2170849..2170873 (25 bp)
GCAAGGAACTCTCCAACTGAGTTAT
LOC_Os10g04590
Target Sequence 
GCTGCGTCTACTGGCTGACCAGATTCTTGGACAGATTGCTCATCCTGGACACCGACGAGATGGAATTGTCCATGTTTGAT
AACTTCCCCCCATCCACAGGATTTGTACTGAATCACACCACTGCGGCCATTGCGGAGGNCAGGGNAAGACANGCTTGGGG
TGTTTAACCTTGATGNTCACAATGTNNATCTCCTCTCTANGGCGATCANGGGCAGCGCCGACGAACAGTGGCGGCATGAC
AAGACTATCCCATTGCTCCCTGGCTACAGTATTTGGAGATTTGTAAATNACGCTGATGTTGACGGNTACATACTNCCTAG
GANGAGTTTTGGGCAGCGGNTTGCAGTCTNATNCCATTACTGATGGATTACAGTATTTCTCACTNGGACCTCANNACNTT
TNGGNTTGAGAGGNNGTGTCCCNTGACAATCTACCAAGCAAGGAACTCTCCAACTGAGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46313.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis