Browse Element(s) Details


OsAffx.26806.1.S1_at

Description tigr:9633.m00880
TID=OsAffx.26806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acid phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0968011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein
LOC_Os05g09640OsAffx.14616.1.S1_at11/115+5426193..5427430Leucine Rich Repeat family protein, expressed
LOC_Os05g09650Os.49179.1.S1_at3/115+5429455..5431324Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os05g09660OsAffx.16862.1.S1_at2/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.29326.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.17706.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09670OsAffx.26805.1.S1_at11/115+5441685..5442425hypothetical protein
LOC_Os05g09680OsAffx.26806.1.S1_at11/115+5444670..5447995hypothetical protein
LOC_Os05g09700NANA5+5450156..5450362hypothetical protein
LOC_Os05g09704Os.10534.1.S1_at11/115+5452049..5454029HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09708NANA5+5460559..5462104hypothetical protein
LOC_Os05g09712OsAffx.22421.4.S1_x_at1/115+5465639..5467936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09712Os.26886.3.S1_x_at1/115+5465639..5467936transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.27435.1.S1_x_at4/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.46334.1.S1_x_at2/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716OsAffx.22421.2.S1_at1/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.51856.1.S2_x_at1/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.51856.1.S2_at1/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g09716Os.46334.1.S1_at1/115+5470718..5474640transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0006979biological_processresponse to oxidative stress
GO:0009611biological_processresponse to wounding
GO:0009625biological_processresponse to insect
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0010149biological_processsenescence (sensu Magnoliophyta)
GO:0042538biological_processhyperosmotic salinity response
GO:0046688biological_processresponse to copper ion
GO:0003993molecular_functionacid phosphatase activity
GO:0008134molecular_functiontranscription factor binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26806.1.S1_at--577--8291Chr05:5445906..5445930 (25 bp)
GGCTAACTATACCTCCAATACGTGC
LOC_Os05g09680
OsAffx.26806.1.S1_at--480--1411Chr05:5445006..5445030 (25 bp)
AGAAAAGGCATTCTCCAGTGAGGAG
LOC_Os05g09680
OsAffx.26806.1.S1_at--308--4971Chr05:5444947..5444971 (25 bp)
GCATCAAGCCACTGTTCCTGAGTGA
LOC_Os05g09680
OsAffx.26806.1.S1_at--510--6691Chr05:5444934..5444958 (25 bp)
GTTCCTGAGTGACCGTACTGACGAC
LOC_Os05g09680
OsAffx.26806.1.S1_at--302--1871Chr05:5444911..5444935 (25 bp)
ACGACCAGAGGGAGCTCACCACCAA
LOC_Os05g09680
OsAffx.26806.1.S1_at--971--8151Chr05:5444855..5444879 (25 bp)
GGAAAGCTTGTGCTCCAACCAGAAG
LOC_Os05g09680
OsAffx.26806.1.S1_at--519--1411Chr05:5444835..5444859 (25 bp)
AGAAGGGCTAGAGACCTCGACGCTA
LOC_Os05g09680
OsAffx.26806.1.S1_at--691--1831Chr05:5444816..5444840 (25 bp)
ACGCTAGCGTTCAAGACATGCGAGC
LOC_Os05g09680
OsAffx.26806.1.S1_at--513--5751Chr05:5444774..5444798 (25 bp)
GACGGATACATCATCGTAGGCAACA
LOC_Os05g09680
OsAffx.26806.1.S1_at--1113--9391Chr05:5444761..5444785 (25 bp)
TCGTAGGCAACATCGATGACCAGTG
LOC_Os05g09680
OsAffx.26806.1.S1_at--534--8171Chr05:5444737..5444761 (25 bp)
GGAACTATATTTCGTCGCTCATCGC
LOC_Os05g09680
Target Sequence 
GGCTAACTATACCTCCAATACGTGCAAGAGAGTTTCTAATTGGGAGAGAAAAGGCATTCTCCAGTGAGGAGACGCTGAGG
CTGTACCAACAGCCGCTACAGCTCGGCATCAAGCCACTGTTCCTGAGTGACCGTACTGACGACGACCAGAGGGAGCTCAC
CACCAACAACCTTCTCCAGCAGGGCTACTGCAATTTGGGAAAGCTTGTGCTCCAACCAGAAGGGCTAGAGACCTCGACGC
TAGCGTTCAAGACATGCGAGCGGCAGAAGCTGGTGAATGACGGATACATCATCGTAGGCAACATCGATGACCAGTGGAAC
TATATTTCGTCGCTCATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis