Browse Element(s) Details


OsAffx.26997.1.S1_x_at

Description tigr:9633.m02164
TID=OsAffx.26997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2427011/11hypothetical protein
LOC_Os03g217801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24220NANA5+13931851..13933640retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24230Os.41248.2.A1_at6/115+13934292..13936161hypothetical protein
LOC_Os05g24230Os.41248.5.S1_x_at5/115+13934292..13936161hypothetical protein
LOC_Os05g24240OsAffx.20628.2.S1_at1/115+13940772..13945007retrotransposon protein, putative, unclassified
LOC_Os05g24240OsAffx.198.1.S1_at1/115+13940772..13945007retrotransposon protein, putative, unclassified
LOC_Os05g24250NANA5+13945658..13951241retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24260OsAffx.14801.1.S1_at11/115+13952947..13953279hypothetical protein
LOC_Os05g24260OsAffx.14801.1.S1_x_at11/115+13952947..13953279hypothetical protein
LOC_Os05g24270OsAffx.26997.1.S1_x_at11/115+13954667..13955041hypothetical protein
LOC_Os05g24280NANA5+13964135..13964419hypothetical protein
LOC_Os05g24290NANA5+13972247..13977823retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26997.1.S1_x_at--1056--9471Chr05:13954782..13954806 (25 bp)
TCTGCAAGCGCGATCGCATCACCAG
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--885--9011Chr05:13954784..13954808 (25 bp)
TGCAAGCGCGATCGCATCACCAGGG
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--796--2671Chr05:13954787..13954811 (25 bp)
AAGCGCGATCGCATCACCAGGGCCA
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--510--3551Chr05:13954798..13954822 (25 bp)
CATCACCAGGGCCATGGAGATGTTC
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--793--3532Chr05:13954876..13954900 (25 bp)
CATCGGCGGCTCTGCTACGTCGGGC
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--97--5971Chr05:13954906..13954930 (25 bp)
GAGAAGGCACTGGACCTGCTCGACA
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--475--1471Chr05:13954907..13954931 (25 bp)
AGAAGGCACTGGACCTGCTCGACAA
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--692--2211Chr05:13954928..13954952 (25 bp)
ACAAGCTCAAGGAGTTGCCGCTCAC
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--1110--2691Chr05:13954930..13954954 (25 bp)
AAGCTCAAGGAGTTGCCGCTCACCC
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--109--1571Chr05:13954931..13954955 (25 bp)
AGCTCAAGGAGTTGCCGCTCACCCG
LOC_Os05g24270
OsAffx.26997.1.S1_x_at--648--4831Chr05:13954947..13954971 (25 bp)
GCTCACCCGCCCCTGTTTGCTGCTG
LOC_Os05g24270
Target Sequence 
TCTGCAAGCGCGATCGCATCACCAGGGCCATGGAGATGTTCGACACCACGCGCGCCGTCGGCTGTGAGCCCACCATCCGC
ACCTACAACAGCCTCATCGGCGGCTCTGCTACGTCGGGCGGCTCGAGAAGGCACTGGACCTGCTCGACAAGCTCAAGGAG
TTGCCGCTCACCCGCCCCTGTTTGCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26997.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis