Browse Element(s) Details


OsAffx.198.1.S1_at

Description gb:NM_196255.1
DB_XREF= gi:37533869
TID=OsAffx.198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2477011/11retrotransposon protein, putative, unclassified
LOC_Os07g134701/11calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os04g022001/11retrotransposon protein, putative, unclassified
LOC_Os05g242401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24720OsAffx.20650.2.S1_at11/1110+12381939..12383147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g24730OsAffx.22947.3.S1_x_at11/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.2.S1_x_at8/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.1.S1_x_at6/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.5.S1_x_at3/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24740NANA10+12399027..12399683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24750NANA10+12400358..12401889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24760OsAffx.8172.1.S1_at6/1110+12402301..12403986retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24770OsAffx.198.1.S1_at11/1110+12405299..12407095retrotransposon protein, putative, unclassified
LOC_Os10g24770OsAffx.20440.2.S1_x_at1/1110+12405299..12407095retrotransposon protein, putative, unclassified
LOC_Os10g24780NANA10+12407675..12408232retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24790Os.35344.3.S1_x_at11/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790Os.35344.18.S1_x_at10/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790OsAffx.22940.5.S1_x_at3/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24800OsAffx.30522.1.S1_at9/1110+12422526..12423202hypothetical protein
LOC_Os10g24810Os.5970.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_x_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.198.1.S1_at--955--5552Chr04:748308..748327 (20 bp)
GAAACCAGAGCTAAACTCCATGAGA
LOC_Os04g02200
OsAffx.198.1.S1_at--772--4331Chr10:12406073..12406097 (25 bp)
CCATGAGACCAAGGAACTAGCTAGA
LOC_Os10g24770
OsAffx.198.1.S1_at--55--3411Chr10:12406044..12406068 (25 bp)
CAGAACATAACCTCATGGACCGGGT
LOC_Os10g24770
OsAffx.198.1.S1_at--866--8091Chr10:12406028..12406052 (25 bp)
GGACCGGGTTGCAGCACTTCAAGAA
LOC_Os10g24770
OsAffx.198.1.S1_at--1027--6732Chr05:13944231..13944568 (25 bp)
GTTCATCCAAAGATCGCAAGATTAA
LOC_Os05g24240
OsAffx.198.1.S1_at--150--6311Chr10:12405655..12405679 (25 bp)
GATGAGGTTGCCAACGCTGGCACAC
LOC_Os10g24770
OsAffx.198.1.S1_at--621--4711Chr10:12405640..12405664 (25 bp)
GCTGGCACACTACTCATCCAAGCTA
LOC_Os10g24770
OsAffx.198.1.S1_at--848--2972Chr07:7721334..7721429 (24 bp)
AATGGTCCAAGTTTTTTCGATGCTG
LOC_Os07g13470
OsAffx.198.1.S1_at--149--10311Chr10:12405587..12405611 (25 bp)
TTTCGATGCTGTTAAAGTCTTTGAC
LOC_Os10g24770
OsAffx.198.1.S1_at--422--1451Chr10:12405416..12405440 (25 bp)
AGAAGACGCCCTTGAGCTTATCAGT
LOC_Os10g24770
OsAffx.198.1.S1_at--703--5911Chr10:12405403..12405427 (25 bp)
GAGCTTATCAGTGATGCCCAGAAAG
LOC_Os10g24770
Target Sequence 
GAAACCAGAGCTAAACTCCATGAGACCAAGGAACTAGCTAGAAAAACAGAACATAACCTCATGGACCGGGTTGCAGCACT
TCAAGAAGTCAACTTCGAGCTGAGTGGTTCATCCAAAGATCGCAAGATTAAATCTCAAGCTCAATTCGAAGTCTTAGTCA
ACAAGATTAAGAAGCTTGAAGGAGCTAGGGATGAGGTTGCCAACGCTGGCACACTACTCATCCAAGCTATGTTTTTCAAT
AACAATGGTCCAAGTTTTTTCGATGCTGTTAAAGTCTTTGACAAGCTGAGAACTGCTCCGGATATATATTTCAAAAATAT
TAGAGAAGCTGGGAGCATGGGAGCAAGCATGGCCTTGGCAATGACTAAGTCCTTGTATCCGAAGATCGATGTTGATGCCA
TTGATGACTTTGCAAACGGAACAAGTGAAGAAGACGCCCTTGAGCTTATCAGTGATGCCCAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis