Browse Element(s) Details


OsAffx.8172.1.S1_at

Description gb:NM_196254.1
DB_XREF= gi:37533867
TID=OsAffx.8172.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol precursor (OSJNBa0094J09.4), mRNA.
PROD=putative gag-pol precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g247606/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g414901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g252201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24710OsAffx.18381.1.S1_at10/1110+12374402..12379530expressed protein
LOC_Os10g24710OsAffx.22250.2.S1_x_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710OsAffx.28492.1.S1_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710Os.46610.1.A1_x_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710Os.38751.1.A1_at1/1110+12374402..12379530expressed protein
LOC_Os10g24720OsAffx.20650.2.S1_at11/1110+12381939..12383147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g24730OsAffx.22947.3.S1_x_at11/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.2.S1_x_at8/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.1.S1_x_at6/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.5.S1_x_at3/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24740NANA10+12399027..12399683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24750NANA10+12400358..12401889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24760OsAffx.8172.1.S1_at6/1110+12402301..12403986retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24770OsAffx.198.1.S1_at11/1110+12405299..12407095retrotransposon protein, putative, unclassified
LOC_Os10g24770OsAffx.20440.2.S1_x_at1/1110+12405299..12407095retrotransposon protein, putative, unclassified
LOC_Os10g24780NANA10+12407675..12408232retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24790Os.35344.3.S1_x_at11/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790Os.35344.18.S1_x_at10/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790OsAffx.22940.5.S1_x_at3/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24800OsAffx.30522.1.S1_at9/1110+12422526..12423202hypothetical protein
LOC_Os10g24810Os.5970.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_x_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed
LOC_Os10g24810Os.46126.1.S1_at11/1110+12424020..12428189Cytidylyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8172.1.S1_at--947--6812Chr10:12403755..12403779 (25 bp)
GTTTTTGACCAAGCAAGAGCTCCCT
LOC_Os10g24760
OsAffx.8172.1.S1_at--517--9613Chr10:12403829..12403853 (25 bp)
TCATGCATGAGACCGAGCTATATAA
LOC_Os10g24760
OsAffx.8172.1.S1_at--1115--4191Chr10:12403860..12403884 (25 bp)
CCCCTCAGGAATTCTGCAATGCTGT
LOC_Os10g24760
OsAffx.8172.1.S1_at--796--9471Chr10:12403872..12403896 (25 bp)
TCTGCAATGCTGTGTTTCTTTGGAG
LOC_Os10g24760
OsAffx.8172.1.S1_at--106--3594Chr10:12403932..12403956 (25 bp)
CATTTGTGGGAATCACGCTGGCGCG
LOC_Os10g24760
OsAffx.8172.1.S1_at--579--3911Chr10:12403949..12403973 (25 bp)
CTGGCGCGCGAACAATTCTTGGCAA
LOC_Os10g24760
OsAffx.8172.1.S1_at--240--3213Chr10:12403971..12404076 (25 bp)
CAAGGCTTATCGACAAATTCACCTA
NONE
OsAffx.8172.1.S1_at--945--8031Chr10:12404085..12404109 (25 bp)
GGAGTTGCAAAACATCCCATTGTCC
NONE
OsAffx.8172.1.S1_at--19--1171Chr10:12404226..12404250 (25 bp)
AGTCATCACGATCACTGCTGATAAG
NONE
OsAffx.8172.1.S1_at--683--9111Chr10:12404241..12404265 (25 bp)
TGCTGATAAGGCTCGAGATTTCTTC
NONE
OsAffx.8172.1.S1_at--295--8992Chr10:12404313..12404337 (25 bp)
TGAAGGTACTCAATTCACTAGTGGG
NONE
Target Sequence 
GTTTTTGACCAAGCAAGAGCTCCCTCAAGACAAAGACAAAGCCGAGCGGATTTCTCGACGCAGCAAGCTTTATGTCATGC
ATGAGACCGAGCTATATAAGAAAAGCCCCTCAGGAATTCTGCAATGCTGTGTTTCTTTGGAGGAGGGAAGGCAATTGCTG
CAAGACATTCACAAAGGCATTTGTGGGAATCACGCTGGCGCGCGAACAATTCTTGGCAAGGCTTATCGACAAATTCACCT
ACCAGCTCAGGAGTTGCAAAACATCCCATTGTCCTGGCCATTTGCGGTTTCGGGGCTTGATATGGTTGGCCCTTTCAAAA
GGGCCACCGGTGGTTTCACTCATCTTTTTGTAGCTGTGGATAAGTTTTCCAAGTGGATTGAAGCCAAACCAGTCATCACG
ATCACTGCTGATAAGGCTCGAGATTTCTTCATCAATATTGTGCACCGGTTTGGGGTACCCAATCGTATTATCACTGATGA
AGGTACTCAATTCACTAGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis