Browse Element(s) Details


Os.48943.1.S1_at

Description gb:AK061202.1
DB_XREF= gi:32971220
TID=Os.48943.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B03, full insert sequence.
FL= gb:AK061202.1 gb:AK103014.1 gb:AK104475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g218408/11reticulon family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21800Os.26538.1.S1_at11/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21800OsAffx.14261.4.S1_x_at10/113+12430913..12435162Transcription factor RF2b, putative, expressed
LOC_Os03g21810Os.24536.1.S1_at11/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21810OsAffx.18721.1.S1_at1/113+12437275..12447855Insulinase containing protein, expressed
LOC_Os03g21820Os.2367.1.S1_at11/113+12448139..12449435Alpha-expansin 10 precursor, putative, expressed
LOC_Os03g21830Os.11463.1.S1_at11/113+12456850..12458968expressed protein
LOC_Os03g21840Os.48943.1.S1_at8/113+12459687..12461931reticulon family protein, putative, expressed
LOC_Os03g21850Os.7258.1.S1_at11/113+12471766..12478845expressed protein
LOC_Os03g21860OsAffx.25185.1.S1_at11/113+12483360..12485699hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48943.1.S1_at--1098--5111Chr03:12460318..12460342 (25 bp)
GCACATGACATTACTCTTGGCAAGG
LOC_Os03g21840
Os.48943.1.S1_at--339--8511Chr03:12460301..12460325 (25 bp)
TGGCAAGGACTTTCGACTCTTTTTC
LOC_Os03g21840
Os.48943.1.S1_at--124--10371Chr03:12460201..12460306 (25 bp)
TTTTTCCAGGTTGTGTTGCTCCTAT
LOC_Os03g21840
Os.48943.1.S1_at--937--10711Chr03:12460186..12460210 (25 bp)
TTGCTCCTATGGCTGTTATCTGTTA
LOC_Os03g21840
Os.48943.1.S1_at--373--8151Chr03:12460159..12460183 (25 bp)
GGAAATTTCTGCTCGTCTATTACTC
LOC_Os03g21840
Os.48943.1.S1_at--1040--4011Chr03:12460146..12460170 (25 bp)
CGTCTATTACTCTTGCTTACTTTGG
LOC_Os03g21840
Os.48943.1.S1_at--705--1191Chr03:12459827..12459851 (25 bp)
AGTAGTCATGCCACTATATCCACAC
LOC_Os03g21840
Os.48943.1.S1_at--969--6351Chr03:12459715..12459739 (25 bp)
GATGCCACTGCAATGTGCTACTATT
LOC_Os03g21840
Os.48943.1.S1_at--593--231Chr03:12459653..12459677 (25 bp)
ATATTTTGCTTGTCCTAGTGCTTTT
NONE
Os.48943.1.S1_at--1108--1111Chr03:12459637..12459661 (25 bp)
AGTGCTTTTTGTCCATTTCTTCAAC
NONE
Os.48943.1.S1_at--659--3291NONE
CAAAGGTACCCAATGTTCGTCACGA
NONE
Target Sequence 
GCACATGACATTACTCTTGGCAAGGACTTTCGACTCTTTTTCCAGGTTGTGTTGCTCCTATGGCTGTTATCTGTTATTGG
AAATTTCTGCTCGTCTATTACTCTTGCTTACTTTGGAACCATTGCTTTGGTCACAATACCTGCATTATACAGTAAGAACC
AGGAGCAAGTTGATAGGTATGCTGGGATGGTCCACAGGAACATATCAAGGCATTACAAGATTGTCGACGAAAATGTGATG
AGCAGGCTACCAAGAAGCTTTATCAGAGATAAAGAGGATTGATTTGTTTAGAAGCTGTGATAGTAGTCATGCCACTATAT
CCACACCCAAGTGTGTGTGTTTTCTACACTTGTATTTTTATGCCGTAGATTGTGCAAATTAGGAATTTAGGGCAAAAGCT
GGAGTATGCTGTAGATGCCACTGCAATGTGCTACTATTCTAACTCTTGAGCAATAAGGTTCGAAACAAAAAAAAAATATT
TTGCTTGTCCTAGTGCTTTTTGTCCATTTCTTCAACAAACTGGATACAAAATTGTCCAAAGGTACCCAATGTTCGTCACG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis