Browse Element(s) Details


Os.50487.1.S1_at

Description gb:AK121399.1
DB_XREF= gi:37991022
TID=Os.50487.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131M07, full insert sequence.
FL= gb:AK121399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2196011/11Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g21914Os.11878.1.S1_at11/113+12512486..12519049expressed protein
LOC_Os03g21914Os.8844.1.S1_at1/113+12512486..12519049expressed protein
LOC_Os03g21930NANA3+12519411..12519737hypothetical protein
LOC_Os03g21940Os.4699.1.S1_at11/113+12521018..1252352560S ribosomal protein L19-1, putative, expressed
LOC_Os03g21950Os.6783.1.S1_s_at11/113+12524813..12531017Fumarate hydratase 1, mitochondrial precursor, putative, expressed
LOC_Os03g21960Os.50487.1.S1_at11/113+12535682..12538535Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
LOC_Os03g21964Os.52651.1.A1_at11/113+12546792..12549652expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003992molecular_functionacetylornithine transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50487.1.S1_at--962--4571Chr03:12536504..12536527 (24 bp)
GCGCTCTCCAGGACAAGCACGAAAT
LOC_Os03g21960
Os.50487.1.S1_at--358--8611Chr03:12536349..12536373 (25 bp)
TGGTGACGGACAGGCAGCTCAAGAC
LOC_Os03g21960
Os.50487.1.S1_at--372--5571Chr03:12536318..12536342 (25 bp)
GAAAGACGAGATTTGCCGCGCCATG
LOC_Os03g21960
Os.50487.1.S1_at--732--9891Chr03:12536155..12536179 (25 bp)
TACGGGAACGTCTTCAGGATCACTC
LOC_Os03g21960
Os.50487.1.S1_at--420--6171Chr03:12535974..12536134 (25 bp)
GAGGATGCCGATTTCTTCGTCGCCG
LOC_Os03g21960
Os.50487.1.S1_at--1093--7231Chr03:12535956..12535980 (25 bp)
GTCGCCGTGATGGACTCTGCACTGT
LOC_Os03g21960
Os.50487.1.S1_at--690--9031Chr03:12535939..12535963 (25 bp)
TGCACTGTCCAAGCTCTGAAACCTG
LOC_Os03g21960
Os.50487.1.S1_at--581--2371Chr03:12535921..12535945 (25 bp)
AAACCTGCTCTGCACGGATGCTAGA
LOC_Os03g21960
Os.50487.1.S1_at--422--4911Chr03:12535807..12535831 (25 bp)
GCTTCGATGCATTTCTTATTTGTCA
LOC_Os03g21960
Os.50487.1.S1_at--473--3191Chr03:12535753..12535777 (25 bp)
CAATCAGTCTTGGTTGAGTCTTGTA
LOC_Os03g21960
Os.50487.1.S1_at--93--331Chr03:12535710..12535734 (25 bp)
ATACGTGTGGTATCCTATATTTAAG
LOC_Os03g21960
Target Sequence 
GCGCTCTCCAGGACAAGCACGAAATTATCGGCGACGTGAGGGGGACGGGTTTCATGCTCGGCGTCGAGCTGGTGACGGAC
AGGCAGCTCAAGACGCCGGCGAAAGACGAGATTTGCCGCGCCATGGAGCACATGAAAGAGATGGGCGTCTTGGTCGGCAA
AGGCGGCTTCTACGGGAACGTCTTCAGGATCACTCCCCCTCTGTGCTTCACCAAGGAGGATGCCGATTTCTTCGTCGCCG
TGATGGACTCTGCACTGTCCAAGCTCTGAAACCTGCTCTGCACGGATGCTAGAAGAGTAGAAGGCCATCAAAGATGTTTC
ACAATCTTCATCAGAGATGCATGGTTTCATGAACAGTTCAGGAAAATTGTTCACTCCTTGATGCTTCGATGCATTTCTTA
TTTGTCAGAAACTTGTAGAGAGAATCTTGGAAATCTCAATCAGTCTTGGTTGAGTCTTGTATATATAGATATAATAAATA
TACGTGTGGTATCCTATATTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis