Browse Element(s) Details


Os.6783.1.S1_s_at

Description gb:AU222838
DB_XREF= gi:15008450
DB_XREF=AU222838
CLONE=S0996
TID=Os.6783.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6783 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_182273.1 (A.thaliana) putative fumarase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2195011/11Fumarate hydratase 1, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g21914Os.11878.1.S1_at11/113+12512486..12519049expressed protein
LOC_Os03g21914Os.8844.1.S1_at1/113+12512486..12519049expressed protein
LOC_Os03g21930NANA3+12519411..12519737hypothetical protein
LOC_Os03g21940Os.4699.1.S1_at11/113+12521018..1252352560S ribosomal protein L19-1, putative, expressed
LOC_Os03g21950Os.6783.1.S1_s_at11/113+12524813..12531017Fumarate hydratase 1, mitochondrial precursor, putative, expressed
LOC_Os03g21960Os.50487.1.S1_at11/113+12535682..12538535Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
LOC_Os03g21964Os.52651.1.A1_at11/113+12546792..12549652expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004333molecular_functionfumarate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6783.1.S1_s_at--580--2931Chr03:12525238..12525261 (24 bp)
AAGGAAGCTGCTCTAGACCTCGGAG
LOC_Os03g21950
Os.6783.1.S1_s_at--792--9231Chr03:12525195..12525219 (25 bp)
TCCATGAGCTTGTTGTTCCAGAGAA
LOC_Os03g21950
Os.6783.1.S1_s_at--163--6611Chr03:12525167..12525191 (25 bp)
GATTGGTCCTTCTGATTGATAGCGA
LOC_Os03g21950
Os.6783.1.S1_s_at--1138--4591Chr03:12525146..12525170 (25 bp)
GCGACTAATGTATTCCTGTCCTGTG
LOC_Os03g21950
Os.6783.1.S1_s_at--458--8711Chr03:12525130..12525154 (25 bp)
TGTCCTGTGGATTTCCTAGCTCTAG
LOC_Os03g21950
Os.6783.1.S1_s_at--779--9991Chr03:12525114..12525138 (25 bp)
TAGCTCTAGCTCACCCGTAAATAAA
LOC_Os03g21950
Os.6783.1.S1_s_at--544--2091Chr03:12525074..12525098 (25 bp)
ACATCTTCAGTTCCTTATCGTATTG
LOC_Os03g21950
Os.6783.1.S1_s_at--1126--2211Chr03:12525011..12525035 (25 bp)
ACAAGATTCCATTCCTGTTACTGAA
LOC_Os03g21950
Os.6783.1.S1_s_at--527--4891Chr03:12524950..12524974 (25 bp)
GCTTTTTATTTCTAGGGCATGCCAT
LOC_Os03g21950
Os.6783.1.S1_s_at--18--10311Chr03:12524922..12524946 (25 bp)
TTTCCCAATGGCGAATCTGCATGTA
LOC_Os03g21950
Os.6783.1.S1_s_at--1059--2971Chr03:12524890..12524914 (25 bp)
AATGTAGCAACCATGCCCGTGGAAA
LOC_Os03g21950
Target Sequence 
AAGGAAGCTGCTCTAGACCTCGGAGTATTGACAGAATCAGAATTCCATGAGCTTGTTGTTCCAGAGAAAATGATTGGTCC
TTCTGATTGATAGCGACTAATGTATTCCTGTCCTGTGGATTTCCTAGCTCTAGCTCACCCGTAAATAAAGCAAGCCAGAC
ATTTACATCTTCAGTTCCTTATCGTATTGNAGAGTTTGTTTTTGCACTGCAAATGGTGCCGGAGAAAACAAGATTCCATT
CCTGTTACTGAAATAGTAAACAGTATATTTTGATTCATTGAAGTAGATGCTTTTTATTTCTAGGGCATGCCATCCTTTTC
CCAATGGCGAATCTGCATGTAATAAGTTAATGTAGCAACCATGCCCGTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6783.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis