Browse Element(s) Details


Os.52651.1.A1_at

Description gb:AK068547.1
DB_XREF= gi:32978564
TID=Os.52651.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157I07, full insert sequence.
FL= gb:AK068547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2196411/11expressed protein
LOC_Os04g353591/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21940Os.4699.1.S1_at11/113+12521018..1252352560S ribosomal protein L19-1, putative, expressed
LOC_Os03g21950Os.6783.1.S1_s_at11/113+12524813..12531017Fumarate hydratase 1, mitochondrial precursor, putative, expressed
LOC_Os03g21960Os.50487.1.S1_at11/113+12535682..12538535Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed
LOC_Os03g21964Os.52651.1.A1_at11/113+12546792..12549652expressed protein
LOC_Os03g21970Os.53575.1.S1_s_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21970Os.53575.1.S1_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21980Os.49477.1.S1_at11/113+12570504..12574469tRNA pseudouridine synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52651.1.A1_at--1103--9571Chr03:12549111..12549135 (25 bp)
TCTTCCTTCCTCTTTTCTTTGTATA
LOC_Os03g21964
Os.52651.1.A1_at--436--6351Chr03:12549145..12549169 (25 bp)
GATGCGGCTCGAAATGTATTGTTTT
LOC_Os03g21964
Os.52651.1.A1_at--1160--4471Chr03:12549184..12549208 (25 bp)
GCCTGTCCTTGTTTGGTTTCATATA
LOC_Os03g21964
Os.52651.1.A1_at--553--231Chr03:12549204..12549228 (25 bp)
ATATATGAGCTTTTCTCCTCCAACA
LOC_Os03g21964
Os.52651.1.A1_at--415--2531Chr03:12549254..12549278 (25 bp)
AACTTTTTGCAATGTCATCTCGATG
LOC_Os03g21964
Os.52651.1.A1_at--376--6611Chr03:12549333..12549357 (25 bp)
GATTGTGTTGGATTGCTTTGACCTT
LOC_Os03g21964
Os.52651.1.A1_at--1022--9553Chr04:21315649..21315669 (21 bp)
TCTTTTCTTGTATTGCAGGTTCTAT
LOC_Os04g35359
Os.52651.1.A1_at--628--1011Chr03:12549425..12549449 (25 bp)
AGGTTCTATATTCCGTAACTCGCCG
LOC_Os03g21964
Os.52651.1.A1_at--285--4031Chr03:12549450..12549474 (25 bp)
CGTTTGGTGTCTACGTTTGGACTAT
LOC_Os03g21964
Os.52651.1.A1_at--865--7531Chr03:12549495..12549519 (25 bp)
GGGCTAACTGGTGTTCAATTTTTCA
LOC_Os03g21964
Os.52651.1.A1_at--1030--2031Chr03:12549615..12549639 (25 bp)
ACTTTATCTCCTCGGTTAATCTACA
LOC_Os03g21964
Target Sequence 
TCTTCCTTCCTCTTTTCTTTGTATAAAAATATAAGATGCGGCTCGAAATGTATTGTTTTTTATATGGTCATCGGCCTGTC
CTTGTTTGGTTTCATATATGAGCTTTTCTCCTCCAACATCTTATTATGTATGGCATTTCCAATAACTTTTTGCAATGTCA
TCTCGATGGCTTGCATATATATGATATTGACGGGAAGGGCCTGTAACTATAGGGGGTACCATGATTGTGTTGGATTGCTT
TGACCTTTACAGAACATTATTTTTCAAGAAAAAGAAATATAGCTGTATTTTGATATCATCTTTTCTTGTATTGCAGGTTC
TATATTCCGTAACTCGCCGCGTTTGGTGTCTACGTTTGGACTATATCTTACTGATTTACATTAGGGGCTAACTGGTGTTC
AATTTTTCATTTCATTCCTACCTNTAAAGATAGGTACTGTGGCATGGAAGATACATGTTTCTGTGCAAGCTAAATCACAC
TTATGCATAAATGCATGGTTAATTACTTTATCTCCTCGGTTAATCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52651.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis