Browse Element(s) Details


Os.53575.1.S1_s_at

Description gb:AK073378.1
DB_XREF= gi:32983401
TID=Os.53575.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029P04, full insert sequence.
FL= gb:AK073378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2197011/11bHLH transcription factor bHLH033, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21964Os.52651.1.A1_at11/113+12546792..12549652expressed protein
LOC_Os03g21970Os.53575.1.S1_s_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21970Os.53575.1.S1_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21980Os.49477.1.S1_at11/113+12570504..12574469tRNA pseudouridine synthase family protein, expressed
LOC_Os03g21990Os.46775.1.S1_at11/113+12578330..12584633PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed
LOC_Os03g22010Os.11561.2.S1_a_at11/113+12590649..12595998Peroxidase 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53575.1.S1_s_at--873--3411Chr03:12568231..12568255 (25 bp)
CAGAAGCGGATCGATCGAGCTCTGT
LOC_Os03g21970
Os.53575.1.S1_s_at--708--5931Chr03:12568291..12568315 (25 bp)
GAGCATGGCCGATCGATCGCAGCAA
LOC_Os03g21970
Os.53575.1.S1_s_at--822--6391Chr03:12568301..12568325 (25 bp)
GATCGATCGCAGCAATTGCTCGAAT
LOC_Os03g21970
Os.53575.1.S1_s_at--620--10711Chr03:12568316..12568340 (25 bp)
TTGCTCGAATGATTAGTCTGTCCTA
LOC_Os03g21970
Os.53575.1.S1_s_at--815--6551Chr03:12568326..12568350 (25 bp)
GATTAGTCTGTCCTATTCTTTCTTT
LOC_Os03g21970
Os.53575.1.S1_s_at--930--7251Chr03:12568335..12568359 (25 bp)
GTCCTATTCTTTCTTTCTCCATTTT
LOC_Os03g21970
Os.53575.1.S1_s_at--1089--4231Chr03:12568363..12568387 (25 bp)
CCGGCATTAATTTCTTCTCTTTTCT
LOC_Os03g21970
Os.53575.1.S1_s_at--228--10391Chr03:12568382..12568406 (25 bp)
TTTTCTCCTGTCTGATCTGTCGTCT
LOC_Os03g21970
Os.53575.1.S1_s_at--1158--6491Chr03:12568438..12568462 (25 bp)
GATAGGCTCCTATAATTCGGTGAAA
LOC_Os03g21970
Os.53575.1.S1_s_at--936--5331Chr03:12568464..12568488 (25 bp)
GAAGTACACCGAAGCATTTCCTGTG
LOC_Os03g21970
Os.53575.1.S1_s_at--586--4951Chr03:12568477..12568501 (25 bp)
GCATTTCCTGTGTAATAGGACTACT
LOC_Os03g21970
Target Sequence 
CAGAAGCGGATCGATCGAGCTCTGTTAATTTCGATCTCCTCCTCCTCGCCGGCCGGCGGCGAGCATGGCCGATCGATCGC
AGCAATTGCTCGAATGATTAGTCTGTCCTATTCTTTCTTTCTCCATTTTCCCCCGGCATTAATTTCTTCTCTTTTCTCCT
GTCTGATCTGTCGTCTCCGCCGTCTACATGGCGGCGCATGCATGCATGATAGGCTCCTATAATTCGGTGAAACGAAGTAC
ACCGAAGCATTTCCTGTGTAATAGGACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53575.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis