Browse Element(s) Details


Os.49477.1.S1_at

Description gb:AK066604.1
DB_XREF= gi:32976622
TID=Os.49477.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49477 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070E06, full insert sequence.
FL= gb:AK066604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2198011/11tRNA pseudouridine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21964Os.52651.1.A1_at11/113+12546792..12549652expressed protein
LOC_Os03g21970Os.53575.1.S1_s_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21970Os.53575.1.S1_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21980Os.49477.1.S1_at11/113+12570504..12574469tRNA pseudouridine synthase family protein, expressed
LOC_Os03g21990Os.46775.1.S1_at11/113+12578330..12584633PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed
LOC_Os03g22010Os.11561.2.S1_a_at11/113+12590649..12595998Peroxidase 2 precursor, putative, expressed
LOC_Os03g22020Os.12843.1.S1_at11/113+12596935..12598451Peroxidase 52 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016439molecular_functiontRNA-pseudouridine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49477.1.S1_at--400--851Chr03:12571041..12571065 (25 bp)
ATGGAATTCTACAGGGCAGCTCTTG
LOC_Os03g21980
Os.49477.1.S1_at--841--1351Chr03:12571012..12571036 (25 bp)
AGAGCTAGCAAACTTCCTGGATGCA
LOC_Os03g21980
Os.49477.1.S1_at--219--8111Chr03:12570952..12570976 (25 bp)
GGACCGATTCACGAGCATACCAGAT
LOC_Os03g21980
Os.49477.1.S1_at--6--1351Chr03:12570854..12570878 (25 bp)
AGAGTGCCAGCAGCGACTAATTTGT
LOC_Os03g21980
Os.49477.1.S1_at--492--5591Chr03:12570840..12570864 (25 bp)
GACTAATTTGTTGCCAAGCCCATCG
LOC_Os03g21980
Os.49477.1.S1_at--902--5431Chr03:12570775..12570799 (25 bp)
GAACCCCATGATTCTATCTCGGATA
LOC_Os03g21980
Os.49477.1.S1_at--202--7951Chr03:12570755..12570779 (25 bp)
GGATATTTCTTCATACAGGAGCAGG
LOC_Os03g21980
Os.49477.1.S1_at--651--9431Chr03:12570717..12570741 (25 bp)
TCGGGCAGAGCCTTGTTTTGATCAT
LOC_Os03g21980
Os.49477.1.S1_at--371--6391Chr03:12570659..12570683 (25 bp)
GATCGGACTACTACAACCTTCAGAT
LOC_Os03g21980
Os.49477.1.S1_at--478--10451Chr03:12570611..12570635 (25 bp)
TTACCGTTTTGCCTAAGCCAATGTT
LOC_Os03g21980
Os.49477.1.S1_at--461--2991Chr03:12570592..12570616 (25 bp)
AATGTTATGTTGTATCCCGGCCACT
LOC_Os03g21980
Target Sequence 
ATGGAATTCTACAGGGCAGCTCTTGTTCCAGAGCTAGCAAACTTCCTGGATGCATCCATGCCTCCATGGAAAGAATGGGT
GGAGAACTTGGACCGATTCACGAGCATACCAGATCCACAGCTGGAGGAAGTTAGGAGCGCTTATAGGGTGTGGAAAGCGG
ACTACGACCGAGTAAAAATGGCCAGAAAGAGTGCCAGCAGCGACTAATTTGTTGCCAAGCCCATCGCACAGTGAATGATG
GGCTAAATAAAATTCTTAGCTGAAGAGAACCCCATGATTCTATCTCGGATATTTCTTCATACAGGAGCAGGAGCAGCCTG
ACTGTCGGGCAGAGCCTTGTTTTGATCATGGCCAGTGAGCCATTGAGACTGAGCTATTGGTTGATCGGACTACTACAACC
TTCAGATTTGGTTCAATTGAATGTTTTTGCTTACCGTTTTGCCTAAGCCAATGTTATGTTGTATCCCGGCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis