Browse Element(s) Details


OsAffx.13230.1.S1_at

Description tigr:9631.m03667
TID=OsAffx.13230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3825011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38200OsAffx.3432.1.S1_at8/113+21165682..21166479hypothetical protein
LOC_Os03g38210OsAffx.14939.1.S1_at10/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38210Os.57514.1.S1_x_at1/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38230Os.21210.1.S1_at11/113+21178638..21180566membrane-associated zinc metalloprotease family protein, expressed
LOC_Os03g38240OsAffx.25411.1.S1_at10/113+21183326..21186831hypothetical protein
LOC_Os03g38240OsAffx.9705.1.S1_x_at1/113+21183326..21186831hypothetical protein
LOC_Os03g38250OsAffx.13230.1.S1_at11/113+21188690..21192472NB-ARC domain containing protein
LOC_Os03g38260Os.4699.1.S1_at4/113+21193237..2119549060S ribosomal protein L19-3, putative, expressed
LOC_Os03g38270NANA3+21197437..21200430retrotransposon protein, putative, unclassified
LOC_Os03g38284OsAffx.20387.1.S1_x_at1/113+21201045..21206845transposon protein, putative, unclassified
LOC_Os03g38300NANA3+21208409..21208870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38310Os.40855.2.S1_x_at2/113+21215206..21217256hypothetical protein
LOC_Os03g38310Os.40360.1.S1_x_at1/113+21215206..21217256hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13230.1.S1_at--177--6071Chr03:21191601..21191625 (25 bp)
GAGTTTCATGGCGAGAATTCCACAA
LOC_Os03g38250
OsAffx.13230.1.S1_at--947--3131Chr03:21191616..21191640 (25 bp)
AATTCCACAAATCGATTCCCAGTAT
LOC_Os03g38250
OsAffx.13230.1.S1_at--157--10271Chr03:21191694..21191718 (25 bp)
TTTGATGGTGACTTCCCTTCACTTC
LOC_Os03g38250
OsAffx.13230.1.S1_at--597--7751Chr03:21191742..21191766 (25 bp)
GGTGAATTGAGAACCCTTCCACATC
LOC_Os03g38250
OsAffx.13230.1.S1_at--737--3631Chr03:21191757..21191781 (25 bp)
CTTCCACATCAATTATCATCCTCTT
LOC_Os03g38250
OsAffx.13230.1.S1_at--624--8951Chr03:21191815..21191839 (25 bp)
TGACAAGACTGCCAACTATTCCCAA
LOC_Os03g38250
OsAffx.13230.1.S1_at--304--3671Chr03:21191830..21191854 (25 bp)
CTATTCCCAACCTAACAATCTTACT
LOC_Os03g38250
OsAffx.13230.1.S1_at--816--1151Chr03:21191889..21191913 (25 bp)
AGTCTGGATTTTCCAATGCTCCAAA
LOC_Os03g38250
OsAffx.13230.1.S1_at--232--7931Chr03:21192157..21192181 (25 bp)
GGATTGAGTGGCAACAGTCTCTAAT
LOC_Os03g38250
OsAffx.13230.1.S1_at--555--6211Chr03:21192320..21192344 (25 bp)
GAGGCTCTTGGTGCACTGAGCGACA
LOC_Os03g38250
OsAffx.13230.1.S1_at--276--10831Chr03:21192414..21192438 (25 bp)
TTGGGCAGTCAAGCGGGACAGCAAT
LOC_Os03g38250
Target Sequence 
GAGTTTCATGGCGAGAATTCCACAAATCGATTCCCAGTATTGGAGGAATTGGAGTTTGAGAACATGCCGAAATGGGTGGA
GTGGACTGGAGTTTTTGATGGTGACTTCCCTTCACTTCGTGAGCTGAAAATCAAGGACAGCGGTGAATTGAGAACCCTTC
CACATCAATTATCATCCTCTTTGAAAAAATTGGTCATCAAGAAATGTGAAAAGCTGACAAGACTGCCAACTATTCCCAAC
CTAACAATCTTACTTTTGATGGGCAATCTTAGCGAAGAAATACACAATAGTCTGGATTTTCCAATGCTCCAAATATTAAA
AGAATGGATTGAGTGGCAACAGTCTCTAATAGACAAGGAAGATAAGCAGCAACCAGAATTTGATAATGCAAGTTATGATC
AAGAGGCTCTTGGTGCACTGAGCGACAATAGTGAGGATGATGTTGAAGTTTTCAATGAAGATGAAGATGACGATTTCTAT
GATGAAATGCTAGAAGTTGGGCAGTCAAGCGGGACAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis