Browse Element(s) Details


OsAffx.25411.1.S1_at

Description tigr:9631.m03666
TID=OsAffx.25411.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3824010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38190OsAffx.25410.1.S1_at10/113+21158714..21163393hypothetical protein
LOC_Os03g38200OsAffx.3432.1.S1_at8/113+21165682..21166479hypothetical protein
LOC_Os03g38210OsAffx.14939.1.S1_at10/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38210Os.57514.1.S1_x_at1/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38230Os.21210.1.S1_at11/113+21178638..21180566membrane-associated zinc metalloprotease family protein, expressed
LOC_Os03g38240OsAffx.25411.1.S1_at10/113+21183326..21186831hypothetical protein
LOC_Os03g38240OsAffx.9705.1.S1_x_at1/113+21183326..21186831hypothetical protein
LOC_Os03g38250OsAffx.13230.1.S1_at11/113+21188690..21192472NB-ARC domain containing protein
LOC_Os03g38260Os.4699.1.S1_at4/113+21193237..2119549060S ribosomal protein L19-3, putative, expressed
LOC_Os03g38270NANA3+21197437..21200430retrotransposon protein, putative, unclassified
LOC_Os03g38284OsAffx.20387.1.S1_x_at1/113+21201045..21206845transposon protein, putative, unclassified
LOC_Os03g38300NANA3+21208409..21208870retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25411.1.S1_at--185--7691Chr03:21184025..21184049 (25 bp)
GGGTACACAGGGTGACCACTCCTCT
LOC_Os03g38240
OsAffx.25411.1.S1_at--334--5631Chr03:21184099..21184123 (25 bp)
GACAGCCGCCGCATGCAGCTAGGGT
LOC_Os03g38240
OsAffx.25411.1.S1_at--740--391Chr03:21184163..21184187 (25 bp)
ATCACCGGCGTCCTCGGAACGAGCA
LOC_Os03g38240
OsAffx.25411.1.S1_at--176--1871Chr03:21184181..21184205 (25 bp)
ACGAGCAAGCCAACGACGCGAGGAT
LOC_Os03g38240
OsAffx.25411.1.S1_at--661--5071Chr03:21184243..21184267 (25 bp)
GCAGCGGTTGCGTGCAATTTGCAAA
LOC_Os03g38240
OsAffx.25411.1.S1_at--71--2731Chr03:21184266..21184290 (25 bp)
AAGCAGTCTGGAGCTTGGTTGCGCT
LOC_Os03g38240
OsAffx.25411.1.S1_at--139--7971Chr03:21184332..21184356 (25 bp)
GGATCATCGGATCCTGTTTCCGACA
LOC_Os03g38240
OsAffx.25411.1.S1_at--316--6831Chr03:21184347..21184371 (25 bp)
GTTTCCGACACCACCACAGTAAAGG
LOC_Os03g38240
OsAffx.25411.1.S1_at--320--9391Chr03:21184377..21184401 (25 bp)
TCGTTCCCAAATCCCATTTTTATCT
LOC_Os03g38240
OsAffx.25411.1.S1_at--405--3591NONE
CATTTTTATCTGTTGCTGGGATCAC
NONE
OsAffx.25411.1.S1_at--362--2531Chr03:21186099..21186123 (25 bp)
AACTTTGGTCTTGTGTTATGCTACA
LOC_Os03g38240
Target Sequence 
GGGTACACAGGGTGACCACTCCTCTTCCCCTCTCTGCATATGCGTCAGCCGCCAGGCGACGGCGGACGGCCACCGACAGC
CGCCGCATGCAGCTAGGGTCGTGCCCGTGCGTGCCGGCTTTGGCGGTGGCGTGTGGCGATCACCGGCGTCCTCGGAACGA
GCAAGCCAACGACGCGAGGATGGGACGGGACCAGGGGAGGAGGGCAGTGCCGCGGCCTGCAGCGGTTGCGTGCAATTTGC
AAAGCAGTCTGGAGCTTGGTTGCGCTGGAGATTGGAGCAGCCGGGTGGGAAGGAGACGATCGAGGGTGGATCATCGGATC
CTGTTTCCGACACCACCACAGTAAAGGAAGGCTCGTTCCCAAATCCCATTTTTATCTGTTGCTGGGATCACATGATGCAG
AAATATCCAACTTTGGTCTTGTGTTATGCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis