Browse Element(s) Details


OsAffx.13228.1.S1_at

Description tigr:9631.m03661
TID=OsAffx.13228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3817011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38120Os.14492.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38120OsAffx.25407.1.S1_at10/113+21119584..21125389expressed protein
LOC_Os03g38130OsAffx.25408.1.S1_at11/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.7988.1.S1_s_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130Os.18335.3.S1_x_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38130OsAffx.12973.1.S1_at1/113+21127669..21130463hypothetical protein
LOC_Os03g38140OsAffx.3431.1.S1_at11/113+21132025..21133091hypothetical protein
LOC_Os03g38150OsAffx.25409.1.S1_at11/113+21134085..21134666hypothetical protein
LOC_Os03g38170OsAffx.13228.1.S1_at11/113+21145945..21153622expressed protein
LOC_Os03g38190OsAffx.25410.1.S1_at10/113+21158714..21163393hypothetical protein
LOC_Os03g38200OsAffx.3432.1.S1_at8/113+21165682..21166479hypothetical protein
LOC_Os03g38210OsAffx.14939.1.S1_at10/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38210Os.57514.1.S1_x_at1/113+21167479..21170171Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13228.1.S1_at--242--7571Chr03:21153070..21153094 (25 bp)
GGGCCGCCTGCTGGAGCGTGCGGAT
LOC_Os03g38170
OsAffx.13228.1.S1_at--495--7291Chr03:21153087..21153111 (25 bp)
GTGCGGATGCGGCTCCGTCGTCACC
LOC_Os03g38170
OsAffx.13228.1.S1_at--162--7111Chr03:21153106..21153130 (25 bp)
GTCACCGCCGGCTGTAGAGCGTCGG
LOC_Os03g38170
OsAffx.13228.1.S1_at--794--671Chr03:21153211..21153235 (25 bp)
ATGATGTCCGGACAGGTTGGTTCAA
LOC_Os03g38170
OsAffx.13228.1.S1_at--1019--10491Chr03:21153231..21153255 (25 bp)
TTCAAACATGAACCTAGACGGCGAG
LOC_Os03g38170
OsAffx.13228.1.S1_at--598--2631Chr03:21153241..21153265 (25 bp)
AACCTAGACGGCGAGCTCCGGAAGA
LOC_Os03g38170
OsAffx.13228.1.S1_at--687--10011Chr03:21153245..21153269 (25 bp)
TAGACGGCGAGCTCCGGAAGATCAA
LOC_Os03g38170
OsAffx.13228.1.S1_at--597--5891Chr03:21153253..21153277 (25 bp)
GAGCTCCGGAAGATCAAGGACCAAT
LOC_Os03g38170
OsAffx.13228.1.S1_at--408--5351Chr03:21153261..21153285 (25 bp)
GAAGATCAAGGACCAATTCGCGACA
LOC_Os03g38170
OsAffx.13228.1.S1_at--1066--3191Chr03:21153562..21153586 (25 bp)
CAATGGCGGTGCTGGTACTCGTCCG
LOC_Os03g38170
OsAffx.13228.1.S1_at--269--3971Chr03:21153568..21153592 (25 bp)
CGGTGCTGGTACTCGTCCGGAGTTC
LOC_Os03g38170
Target Sequence 
GGGCCGCCTGCTGGAGCGTGCGGATGCGGCTCCGTCGTCACCGCCGGCTGTAGAGCGTCGGCGCGGCTCCGTCGGCCAGG
CGCTGCAAGAACTAGCGGGAGTGCGCAGGAGGAGGAGCCAGACGATGAGGTGGCGGCGACGATGATGTCCGGACAGGTTG
GTTCAAACATGAACCTAGACGGCGAGCTCCGGAAGATCAAGGACCAATTCGCGACATGGAAGAAAGACTACAAGTCTCGG
TTGAAGGAGACCAAGGCTGACAAGATGACGACGACGATGAGCTCCATCGTCAATGGCGGTGCTGGTACTCGTCCGGAGTT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis