Browse Element(s) Details


OsAffx.3429.1.S1_at

Description tigr:9631.m03649
TID=OsAffx.3429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3804011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g38000Os.21763.1.S1_at11/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38000Os.57491.1.S1_at7/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38010Os.18577.1.S1_at10/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38010Os.36139.1.S1_at1/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38020Os.12047.1.S1_a_at11/113+21063427..21066926Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g38040OsAffx.3429.1.S1_at11/113+21070565..21071086hypothetical protein
LOC_Os03g38050Os.50014.1.S1_at10/113+21072516..21078010Galactosyltransferase family protein, expressed
LOC_Os03g38070NANA3+21086984..21089807retrotransposon protein, putative, unclassified
LOC_Os03g38076OsAffx.22722.1.S1_at2/113+21090275..21092564retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38076OsAffx.22722.1.S1_x_at2/113+21090275..21092564retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g38082NANA3+21093587..21096368retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3429.1.S1_at--963--4891Chr03:21070603..21070627 (25 bp)
TCTTGGAGGGCGAGGAGGGCTTCTT
LOC_Os03g38040
OsAffx.3429.1.S1_at--1054--8091Chr03:21070776..21070800 (25 bp)
GGACGGATGCCTTAGTGGACTTGAT
LOC_Os03g38040
OsAffx.3429.1.S1_at--167--4311Chr03:21070785..21070809 (25 bp)
CCTTAGTGGACTTGATGGGTGACGC
LOC_Os03g38040
OsAffx.3429.1.S1_at--117--7711Chr03:21070880..21070904 (25 bp)
GGGTGTGGGCGCGTCTTCTTGGAGG
LOC_Os03g38040
OsAffx.3429.1.S1_at--708--5971Chr03:21070904..21070928 (25 bp)
GAGACCAGTGGCATGGTAGTCAGTT
LOC_Os03g38040
OsAffx.3429.1.S1_at--358--4351Chr03:21070908..21070932 (25 bp)
CCAGTGGCATGGTAGTCAGTTCTGC
LOC_Os03g38040
OsAffx.3429.1.S1_at--387--511Chr03:21071014..21071038 (25 bp)
ATCGTCGCCAACAATAGAGCTCCTC
LOC_Os03g38040
OsAffx.3429.1.S1_at--903--2451Chr03:21071023..21071047 (25 bp)
AACAATAGAGCTCCTCACTTGGGAC
LOC_Os03g38040
OsAffx.3429.1.S1_at--84--3111Chr03:21071026..21071050 (25 bp)
AATAGAGCTCCTCACTTGGGACGAC
LOC_Os03g38040
OsAffx.3429.1.S1_at--287--10031Chr03:21071028..21071052 (25 bp)
TAGAGCTCCTCACTTGGGACGACAG
LOC_Os03g38040
OsAffx.3429.1.S1_at--645--5891Chr03:21071030..21071054 (25 bp)
GAGCTCCTCACTTGGGACGACAGCG
LOC_Os03g38040
Target Sequence 
TCTTGGAGGGCGAGGAGGGCTTCTTCTTCTTGGCCGGCGTCGGCACGGGGGTCGTCGAGCTTGGTGGGGATGGTGGCGGG
CGCTTCGGCAACGGGGGAAAGAGGCGAGGCAACGGGAACCTCGACCGGGGGAGAGGAGGCCGGCGGCGGGGTGGCCTTGG
GCCTTGGGCGCCGGGACGGATGCCTTAGTGGACTTGATGGGTGACGCGGTGGCCGAAGCCGGGGTAATGGGCGCCTGCGG
AGGGGGCCGGGGTGGCGGGGGTGGTCGGCACAGCGGCGGGTGTGGGCGCGTCTTCTTGGAGGAGACCAGTGGCATGGTAG
TCAGTTCTGCCGCGGGGGCGGGCGGAGATGGCGGCATCGATGTCGAGAGCAACCTCCTCCTCTGCTCCAACCTCGCCATC
TCCGCCCCTCCATCGTCGCCAACAATAGAGCTCCTCACTTGGGACGACAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis