Browse Element(s) Details


Os.18577.1.S1_at

Description gb:AK101786.1
DB_XREF= gi:32986995
TID=Os.18577.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033065E09, full insert sequence.
FL= gb:AK101786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3801010/11Nuf2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37950Os.47720.1.S1_s_at11/113+21032951..21035420PCI domain containing protein, expressed
LOC_Os03g37954Os.51289.1.S1_at11/113+21035991..21036590expressed protein
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative
LOC_Os03g37970Os.12362.1.S1_at10/113+21040969..2104319560S ribosomal protein L13-2, putative, expressed
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g38000Os.21763.1.S1_at11/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38000Os.57491.1.S1_at7/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38010Os.18577.1.S1_at10/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38010Os.36139.1.S1_at1/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38020Os.12047.1.S1_a_at11/113+21063427..21066926Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g38040OsAffx.3429.1.S1_at11/113+21070565..21071086hypothetical protein
LOC_Os03g38050Os.50014.1.S1_at10/113+21072516..21078010Galactosyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18577.1.S1_at--467--5371Chr03:21057386..21057405 (20 bp)
GAAGAACTGCGGCTGATATAAGCTA
LOC_Os03g38010
Os.18577.1.S1_at--660--9131NONE
TGCGGCTGATATAAGCTAAATTTCA
NONE
Os.18577.1.S1_at--525--2811Chr03:21056955..21056979 (25 bp)
AAGATAGCTAGGGTGTTTTGCGCCA
LOC_Os03g38010
Os.18577.1.S1_at--1084--291Chr03:21056952..21056976 (25 bp)
ATAGCTAGGGTGTTTTGCGCCACTG
LOC_Os03g38010
Os.18577.1.S1_at--378--7431Chr03:21056943..21056967 (25 bp)
GTGTTTTGCGCCACTGTTGTAAATT
LOC_Os03g38010
Os.18577.1.S1_at--929--6791Chr03:21056941..21056965 (25 bp)
GTTTTGCGCCACTGTTGTAAATTTG
LOC_Os03g38010
Os.18577.1.S1_at--854--4551Chr03:21056936..21056960 (25 bp)
GCGCCACTGTTGTAAATTTGGAATT
LOC_Os03g38010
Os.18577.1.S1_at--210--1211Chr03:21056885..21056909 (25 bp)
AGTTATGCTCTGTTTGAACCTCATC
LOC_Os03g38010
Os.18577.1.S1_at--487--6791Chr03:21056884..21056908 (25 bp)
GTTATGCTCTGTTTGAACCTCATCT
LOC_Os03g38010
Os.18577.1.S1_at--406--411Chr03:21056836..21056860 (25 bp)
ATCATCGAATCATCTGCAGTCGTTA
LOC_Os03g38010
Os.18577.1.S1_at--944--2251Chr03:21056804..21056828 (25 bp)
AAATCTTGAGTCACTCTGATATGGA
LOC_Os03g38010
Target Sequence 
GAAGAACTGCGGCTGATATAAGCTAAATTTCAACAAATTGGACATGCCTTTACTTGCTACAAGGACAATTTTAAGACTTT
CTTGGAACAAGTTGATGAGGTGAGCAAAGAAACTTTAGAAAGTTTAGGTCGCCAAGCTGTGGAGCCATTGGACACATCTG
CAACATTGTCGATTGAGAAAGAGAACTCCTGCGGCCCCGCTCCCTGAAAAGAGGATAGCCAATTGGAGAAGATAGCTAGG
GTGTTTTGCGCCACTGTTGTAAATTTGGAATTGAGCTGTTTTTGTTATCACTGGTGACAGTTATGCTCTGTTTGAACCTC
ATCTGACCAATTCGGTGAGAATACTTCATCATCGAATCATCTGCAGTCGTTATGTAAAAAAATCTTGAGTCACTCTGATA
TGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis