Browse Element(s) Details


Os.12362.1.S1_at

Description gb:AY323130.1
DB_XREF= gi:32493111
TID=Os.12362.1
CNT=93
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12362 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) ribosomal protein large subunit 13 mRNA, complete cds.
PROD=ribosomal protein large subunit 13
FL= gb:AK070375.1 gb:AB051074.1 gb:AK104259.1 gb:AK104895.1 gb:AY323130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3797010/1160S ribosomal protein L13-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37930OsAffx.3426.1.S1_at11/113+21015268..21019598Potassium transporter 1, putative
LOC_Os03g37940OsAffx.13225.1.S1_at11/113+21021183..21021653hypothetical protein
LOC_Os03g37950Os.47720.1.S1_s_at11/113+21032951..21035420PCI domain containing protein, expressed
LOC_Os03g37954Os.51289.1.S1_at11/113+21035991..21036590expressed protein
LOC_Os03g37960OsAffx.3427.1.S1_at11/113+21037491..21039161Acyl-CoA-binding protein, putative
LOC_Os03g37970Os.12362.1.S1_at10/113+21040969..2104319560S ribosomal protein L13-2, putative, expressed
LOC_Os03g37984Os.15816.1.S1_a_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g37984Os.10650.1.S1_at11/113+21046570..21051635amino acid permease family protein, putative, expressed
LOC_Os03g38000Os.21763.1.S1_at11/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38000Os.57491.1.S1_at7/113+21052184..2105467340S ribosomal protein S3, putative, expressed
LOC_Os03g38010Os.18577.1.S1_at10/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38010Os.36139.1.S1_at1/113+21056780..21060623Nuf2 family protein, expressed
LOC_Os03g38020Os.12047.1.S1_a_at11/113+21063427..21066926Mps one binder kinase activator-like 1A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12362.1.S1_at--926--9091Chr03:21041709..21041733 (25 bp)
TGCTCCAACCATTGGAATTTCCGTG
LOC_Os03g37970
Os.12362.1.S1_at--142--4831Chr03:21041665..21041689 (25 bp)
GCTCACTTGAGGGACTCCAGGCTAA
LOC_Os03g37970
Os.12362.1.S1_at--230--9231Chr03:21041650..21041674 (25 bp)
TCCAGGCTAATGTCCAGAGGCTCAA
LOC_Os03g37970
Os.12362.1.S1_at--281--2691Chr03:21041612..21041636 (25 bp)
AAGCTGGTTATCTTCCCAAGGCGTG
LOC_Os03g37970
Os.12362.1.S1_at--764--2951Chr03:21041358..21041382 (25 bp)
AAGGCCTATGCTAAGCTCCGTGTTG
LOC_Os03g37970
Os.12362.1.S1_at--1068--7371Chr03:21041258..21041282 (25 bp)
GTGACCGGACATAGTATCTGTTTTG
LOC_Os03g37970
Os.12362.1.S1_at--425--132Chr08:3696183..3696207 (25 bp)
ATTCAGCAGCTAGTGGATGCTATCA
NONE
Os.12362.1.S1_at--1139--151Chr03:21041153..21041177 (25 bp)
ATTTTGGTGTCATCATACCCCTTCT
LOC_Os03g37970
Os.12362.1.S1_at--332--391Chr03:21041142..21041166 (25 bp)
ATCATACCCCTTCTGTTTGATATCT
LOC_Os03g37970
Os.12362.1.S1_at--272--252Chr08:3695839..3695858 (20 bp)
ATATCTGGTACTGATTTGCATGCTC
NONE
Os.12362.1.S1_at--284--91NONE
ATTCCATCCAATGTGTTGTGTCTGA
NONE
Target Sequence 
TGCTCCAACCATTGGAATTTCCGTGGATCACCGCCGCAAGAACCGCTCACTTGAGGGACTCCAGGCTAATGTCCAGAGGC
TCAAGACATACAAGGCCAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTCAAGGCTGGTGATTCCACTGCCGAGGAA
CTTGCCACTGCCACCCAGGTCCAGGGTGACTACATGCCTATTGCTCGTGGTGAGAAGCGCTCAGTTGAGGTTGTGAAGGT
CACCGATGAGATGAAGGCGTTCAAGGCCTATGCTAAGCTCCGTGTTGAGAGGATGAACCAGCGCCATGTTGGTGCCCGCC
AGAAGAGGGCTGCTGAGGCAGAGAAGGAAGAGAAGAAGTGAAGTGACCGGACATAGTATCTGTTTTGTTATATTCAGCAG
CTAGTGGATGCTATCAGGGACTAAATCTAAATTTTGTTTTTGTGCTGGAAATAGAGACCAGCTTATCATTTTGGTGTCAT
CATACCCCTTCTGTTTGATATCTGGTACTGATTTGCATGCTCTGCTATCGAATGAAATTCCATCCAATGTGTTGTGTCTG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis