Browse Element(s) Details


OsAffx.24130.1.S1_x_at

Description tigr:9630.m00572
TID=OsAffx.24130.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0642011/11hypothetical protein
LOC_Os01g094406/11hypothetical protein
LOC_Os05g261402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06360Os.7064.1.S1_s_at11/112+3179627..3182762KpsF/GutQ family protein, expressed
LOC_Os02g06370Os.32450.1.S1_at10/112+3182870..3187022DNA-binding protein, putative, expressed
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein
LOC_Os02g06450OsAffx.2521.1.S1_at11/112+3219169..3219516hypothetical protein
LOC_Os02g06460Os.49520.1.A1_at5/112+3220489..3225189hypothetical protein
LOC_Os02g06460Os.8872.1.S1_at1/112+3220489..3225189hypothetical protein
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24130.1.S1_x_at--382--4572Chr01:4805121..4805145 (25 bp)
GCGCGGGCGACAGATGTGCAACCAT
LOC_Os01g09440
OsAffx.24130.1.S1_x_at--246--4152Chr01:4805122..4805146 (25 bp)
CGCGGGCGACAGATGTGCAACCATG
LOC_Os01g09440
OsAffx.24130.1.S1_x_at--265--3992Chr01:4805124..4805148 (25 bp)
CGGGCGACAGATGTGCAACCATGGC
LOC_Os01g09440
OsAffx.24130.1.S1_x_at--169--7572Chr01:4805125..4805149 (25 bp)
GGGCGACAGATGTGCAACCATGGCG
LOC_Os01g09440
OsAffx.24130.1.S1_x_at--229--4112Chr01:4805128..4805152 (25 bp)
CGACAGATGTGCAACCATGGCGGCG
LOC_Os01g09440
OsAffx.24130.1.S1_x_at--679--1312Chr01:4805132..4805156 (25 bp)
AGATGTGCAACCATGGCGGCGGCCT
LOC_Os01g09440
OsAffx.24130.1.S1_x_at--929--8794Chr01:4805307..4805331 (25 bp)
TGTTCCTCCGTGCTCTACGAGGACA
NONE
OsAffx.24130.1.S1_x_at--244--9274Chr01:4805310..4805334 (25 bp)
TCCTCCGTGCTCTACGAGGACAGCA
NONE
OsAffx.24130.1.S1_x_at--664--7312Chr01:4805316..4805340 (25 bp)
GTGCTCTACGAGGACAGCACCTCGG
NONE
OsAffx.24130.1.S1_x_at--406--7192Chr01:4805466..4805490 (25 bp)
GTCGGCGGGCGAGCACAATGGCGGA
NONE
OsAffx.24130.1.S1_x_at--812--7732Chr01:4805502..4805526 (25 bp)
GGTGGGCGAGTGTGGCTGCGGAGAA
NONE
Target Sequence 
GCGCGGGCGACAGATGTGCAACCATGGCGGCGGCCTCCTCGCTCTCCCGTCGCGCTCCCTATCGGNGCCGTCCGCCTCCG
CCTCGTCCTCCTGCGCCCGCCCTCCCACTCCGNCGGCCTCCGTCACCTCTCCACCTGCTGNCGTGGANGACNACGGCGGC
CTCCTNGCTCTCNCCGTCNNNNCTCNTGTTCCTCCGTGCTCTACGAGGACAGCACCTCGGGCGCCGNCGACGAGGCCCCC
GTCNCGCGTTGCTCGCTGCTGCCGTTCGATCTGAACCTGCCGGCCTCGTCCCCGAAGGAGCCGCCGCCNCACCAGAANGG
CGGCCAGAGCAAGCGGANCGGCGGTGTCGGCGGGCGAGCACAATGGCGGAGCNGCGGCTTCGGTGGGCGAGTGTGGCTGC
GGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24130.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis