Browse Element(s) Details


Os.8872.1.S1_at

Description gb:AK073907.1
DB_XREF= gi:32983930
TID=Os.8872.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072P22, full insert sequence.
FL= gb:AK073907.1 gb:AK105848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0648011/11SCO1/SenC family protein, expressed
LOC_Os02g064601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein
LOC_Os02g06450OsAffx.2521.1.S1_at11/112+3219169..3219516hypothetical protein
LOC_Os02g06460Os.49520.1.A1_at5/112+3220489..3225189hypothetical protein
LOC_Os02g06460Os.8872.1.S1_at1/112+3220489..3225189hypothetical protein
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed
LOC_Os02g06490OsAffx.24131.1.S1_at10/112+3234378..3237519Vacuolar protein sorting-associated protein VPS4, putative
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed
LOC_Os02g06510OsAffx.11918.1.S1_s_at11/112+3251639..3252390myosin heavy chain, putative, expressed
LOC_Os02g06520Os.18079.1.S1_at11/112+3254923..3256937F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8872.1.S1_at--74--7291Chr02:3230578..3230602 (25 bp)
GTGCCAGTTTTCATCACAGTTGATC
LOC_Os02g06480
Os.8872.1.S1_at--285--951Chr02:3230353..3230377 (25 bp)
AGGACTAACTGGCACAACTGATGAG
LOC_Os02g06480
Os.8872.1.S1_at--261--2751Chr02:3230326..3230350 (25 bp)
AAGAAAGGTTGCTCGTGCTTATCGA
LOC_Os02g06480
Os.8872.1.S1_at--924--7671Chr02:3230275..3230299 (25 bp)
GGGTTCTGATTATCTCGTTGATCAC
LOC_Os02g06480
Os.8872.1.S1_at--533--6652Chr02:3230261..3230283 (23 bp)
GTTGATCACTCAATTGTCATGTACT
LOC_Os02g06480
Os.8872.1.S1_at--656--6331Chr02:3229289..3229313 (25 bp)
GATGCAGATTCTCTTGCTGATGGCA
LOC_Os02g06480
Os.8872.1.S1_at--1070--6471Chr02:3229234..3229258 (25 bp)
GATAGCTGACCCACAATTAATCTGG
LOC_Os02g06480
Os.8872.1.S1_at--1039--8231Chr02:3229211..3229235 (25 bp)
GGCAAACTATTTTCCGAATCTCTCC
LOC_Os02g06480
Os.8872.1.S1_at--155--3171Chr02:3229164..3229188 (25 bp)
AATTGCAAACAATGGGTGGCGCTCA
LOC_Os02g06480
Os.8872.1.S1_at--945--2671Chr02:3229140..3229164 (25 bp)
AAGGTCAACCCGTAGTTCGTAGCTG
LOC_Os02g06480
Os.8872.1.S1_at--624--6711Chr02:3229126..3229150 (25 bp)
GTTCGTAGCTGTTTTTTCTGCTCAT
LOC_Os02g06480
Target Sequence 
GTGCCAGTTTTCATCACAGTTGATCCTGAGAGAGATACTGTAGAGCAAGTTCGTGACTATGTTAATGAGTTTCATCCAAN
TCTAATAGGACTAACTGGCACAACTGATGAGATAAGAAAGGTTGCTCGTGCTTATCGAGTTTACTATATGAAGACAGAGG
AGGAGGGTTCTGATTATCTCGTTGATCACTCAATTGTCATGTACTTGATGAATCCAAAGATGGAGTTTGTTAAATTTTAC
GGCAAGAACTACGATGCAGATTCTCTTGCTGATGGCATCANTCNAAAGAACTTAAAGGGCACCAATAAAGATAGCTGACC
CACAATTAATCTGGCAAACTATTTTCCGAATCTCTCCAAAAGATTTCATCTATGTACACAATTGCAAACAATGGGTGGCG
CTCAAGGTCAACCCGTAGTTCGTAGCTGTTTTTTCTGCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis