Browse Element(s) Details


OsAffx.11917.1.S1_x_at

Description tigr:9630.m00574
TID=OsAffx.11917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g064409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein
LOC_Os02g06450OsAffx.2521.1.S1_at11/112+3219169..3219516hypothetical protein
LOC_Os02g06460Os.49520.1.A1_at5/112+3220489..3225189hypothetical protein
LOC_Os02g06460Os.8872.1.S1_at1/112+3220489..3225189hypothetical protein
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed
LOC_Os02g06490OsAffx.24131.1.S1_at10/112+3234378..3237519Vacuolar protein sorting-associated protein VPS4, putative
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11917.1.S1_x_at--634--8331Chr02:3217697..3217721 (25 bp)
GGCTGCAACGGCTGGTCTGCCACGA
LOC_Os02g06440
OsAffx.11917.1.S1_x_at--41--9031Chr02:3217694..3217718 (25 bp)
TGCAACGGCTGGTCTGCCACGAGCT
LOC_Os02g06440
OsAffx.11917.1.S1_x_at--789--2571Chr02:3217691..3217715 (25 bp)
AACGGCTGGTCTGCCACGAGCTGCT
LOC_Os02g06440
OsAffx.11917.1.S1_x_at--952--8331Chr02:3217688..3217712 (25 bp)
GGCTGGTCTGCCACGAGCTGCTCGA
LOC_Os02g06440
OsAffx.11917.1.S1_x_at--64--4731Chr02:3217687..3217711 (25 bp)
GCTGGTCTGCCACGAGCTGCTCGAC
LOC_Os02g06440
OsAffx.11917.1.S1_x_at--877--8371Chr02:3217647..3217671 (25 bp)
GGCGACAACTACATCCTGCATTTCG
LOC_Os02g06440
OsAffx.11917.1.S1_x_at--213--3851Chr02:3217632..3217656 (25 bp)
CTGCATTTCGCCGTCGCTGTGATGA
LOC_Os02g06440
OsAffx.11917.1.S1_x_at--696--4011NONE
CGTCGCTGTGATGAGTATGCTTGAA
NONE
OsAffx.11917.1.S1_x_at--292--4131NONE
CGCTGTGATGAGTATGCTTGAAGAA
NONE
OsAffx.11917.1.S1_x_at--478--10731Chr02:3216974..3216998 (25 bp)
TTGAAGAAAACATTGGAATCTGCTC
LOC_Os02g06440
OsAffx.11917.1.S1_x_at--375--1431Chr02:3216970..3216994 (25 bp)
AGAAAACATTGGAATCTGCTCAGTT
LOC_Os02g06440
Target Sequence 
GGCTGCAACGGCTGGTCTGCCACGAGCTGCTCGACGGCGGCGGCGGCGGCGGCGACAACTACATCCTGCATTTCGCCGTC
GCTGTGATGAGTATGCTTGAAGAAAACATTGGAATCTGCTCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11917.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis