Browse Element(s) Details


Os.8872.1.S2_at

Description gb:AK105848.1
DB_XREF= gi:32991057
TID=Os.8872.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G06, full insert sequence.
FL= gb:AK073907.1 gb:AK105848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0648010/11SCO1/SenC family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein
LOC_Os02g06450OsAffx.2521.1.S1_at11/112+3219169..3219516hypothetical protein
LOC_Os02g06460Os.49520.1.A1_at5/112+3220489..3225189hypothetical protein
LOC_Os02g06460Os.8872.1.S1_at1/112+3220489..3225189hypothetical protein
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed
LOC_Os02g06490OsAffx.24131.1.S1_at10/112+3234378..3237519Vacuolar protein sorting-associated protein VPS4, putative
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed
LOC_Os02g06510OsAffx.11918.1.S1_s_at11/112+3251639..3252390myosin heavy chain, putative, expressed
LOC_Os02g06520Os.18079.1.S1_at11/112+3254923..3256937F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8872.1.S2_at--221--9431Chr02:3228025..3228049 (25 bp)
TCGTGGCGCCGGTACAGGAGCCACT
LOC_Os02g06480
Os.8872.1.S2_at--852--1731Chr02:3227701..3227725 (25 bp)
ACCATCTCGTCTGCGCGCAAAAGAG
LOC_Os02g06480
Os.8872.1.S2_at--170--2771Chr02:3227681..3227705 (25 bp)
AAGAGAACAAATGAGGGCACCCAAG
LOC_Os02g06480
Os.8872.1.S2_at--758--1071Chr02:3227668..3227692 (25 bp)
AGGGCACCCAAGTTGTCTCTCTAGT
LOC_Os02g06480
Os.8872.1.S2_at--1103--7151Chr02:3227654..3227678 (25 bp)
GTCTCTCTAGTCTCGGACACGTATA
LOC_Os02g06480
Os.8872.1.S2_at--1100--8131Chr02:3227640..3227664 (25 bp)
GGACACGTATATTTATAGTCTACTG
LOC_Os02g06480
Os.8872.1.S2_at--836--10051Chr02:3227625..3227649 (25 bp)
TAGTCTACTGACCATTTCCGATTCG
LOC_Os02g06480
Os.8872.1.S2_at--941--5831Chr02:3227616..3227640 (25 bp)
GACCATTTCCGATTCGTTTACGGCT
LOC_Os02g06480
Os.8872.1.S2_at--653--9371Chr02:3227603..3227627 (25 bp)
TCGTTTACGGCTTACGGCATTTGGT
LOC_Os02g06480
Os.8872.1.S2_at--333--8291Chr02:3227588..3227612 (25 bp)
GGCATTTGGTAATTTCCGATTCGAA
LOC_Os02g06480
Os.8872.1.S2_at--853--9351Chr02:3227568..3227592 (25 bp)
TCGAACAACAGAAATCTTGGTCGTC
NONE
Target Sequence 
TCGTGGCGCCGGTACAGGAGCCACTCGCCGCAGGAGCCGAGCCAGCCGGCGGCGGCGGGCAGCCGGAACGGCCGCGCGTC
CTCCGGGAAGAAGCCGCGGAAGCTGCCGTCGGCGAAGCAGAGGCACGGCGACAGCGGCGGCGGCGCGCGGTGTTCCCGCG
CGGACGTGCGCCACGAGCGGCACGTGGCGCCGAAGCAGATGCGGTCGGCGTAGGACGGGAGGCGGCGGAGGACCTCGCCG
GCGATGTCCAGCGGGAGGTCCCGCCACGACGACGCCGGCGGCGAGCACGGCGACGTCGTCCGCGCCCTTTTGCGCGGCCT
CTGCACCATCTCGTCTGCGCGCAAAAGAGAACAAATGAGGGCACCCAAGTTGTCTCTCTAGTCTCGGACACGTATATTTA
TAGTCTACTGACCATTTCCGATTCGTTTACGGCTTACGGCATTTGGTAATTTCCGATTCGAACAACAGAAATCTTGGTCG
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8872.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis