Browse Element(s) Details


Os.18079.1.S1_at

Description gb:AK109618.1
DB_XREF= gi:32994827
TID=Os.18079.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.18079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H06, full insert sequence.
FL= gb:AK109618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0652011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06490OsAffx.24131.1.S1_at10/112+3234378..3237519Vacuolar protein sorting-associated protein VPS4, putative
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed
LOC_Os02g06510OsAffx.11918.1.S1_s_at11/112+3251639..3252390myosin heavy chain, putative, expressed
LOC_Os02g06520Os.18079.1.S1_at11/112+3254923..3256937F-box domain containing protein, expressed
LOC_Os02g06530OsAffx.11919.1.S1_s_at11/112+3263666..3265602Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os02g06540Os.50048.1.S1_at11/112+3266009..3268698Sugar carrier protein C, putative, expressed
LOC_Os02g06550NANA2+3270601..3271272retrotransposon, putative, centromere-specific
LOC_Os02g06560NANA2+3279685..3279951expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18079.1.S1_at--648--9071Chr02:3256207..3256231 (25 bp)
TGCTCATGTTCGGAATGGCCAACTC
LOC_Os02g06520
Os.18079.1.S1_at--887--5051Chr02:3256390..3256414 (25 bp)
GCAGCTCCCAACAAACACTTATGAT
LOC_Os02g06520
Os.18079.1.S1_at--136--2371Chr02:3256474..3256498 (25 bp)
AAACCTTCGGTTGGTCAAGATGACA
LOC_Os02g06520
Os.18079.1.S1_at--462--2531Chr02:3256521..3256545 (25 bp)
AACTACGACTGGTGGATTTCCTGCT
LOC_Os02g06520
Os.18079.1.S1_at--573--5551Chr02:3256549..3256573 (25 bp)
GAAAGCTAGCCGTCTTAACAAACTG
LOC_Os02g06520
Os.18079.1.S1_at--156--9831Chr02:3256564..3256588 (25 bp)
TAACAAACTGTTCCTGATTGCTCCC
LOC_Os02g06520
Os.18079.1.S1_at--980--5571Chr02:3256614..3256638 (25 bp)
GAAAGGTCCACTCGGAGGCACTGCC
LOC_Os02g06520
Os.18079.1.S1_at--390--1991Chr02:3256633..3256657 (25 bp)
ACTGCCCCATTTTCTCAAGACAGAT
LOC_Os02g06520
Os.18079.1.S1_at--499--2771Chr02:3256672..3256696 (25 bp)
AAGAGCTTCAGCAATCGCCCAGATA
LOC_Os02g06520
Os.18079.1.S1_at--584--1271Chr02:3256722..3256746 (25 bp)
AGATACTACCCTTGCATTCGGAGGT
LOC_Os02g06520
Os.18079.1.S1_at--328--1791Chr02:3256780..3256804 (25 bp)
ACCGTAGTTTAATTGCTGCTCCTTA
LOC_Os02g06520
Target Sequence 
TGCTCATGTTCGGAATGGCCAACTCCAACCTCGCAGATATNTATAGCTTCCTCAAGGCCTGCCGTTGTCCTCAGTTGGAG
AGGCTNTTNGTGCAGCTCCCAACAAACACTTATGATTCGTTCACGACGAATTATTTGGAGGTAGCAGAGGAAGAACCGCC
TGAAGGCGGATTAGAAAACCTTCGGTTGGTCAAGATGACAAACTTCAAGGGTTATCGCAATGAACTACGACTGGTGGATT
TCCTGCTGAGGAAAGCTAGCCGTCTTAACAAACTGTTCCTGATTGCTCCCAAGGAGGTTCACCCACAAGGCCTCCGAAAG
GTCCACTCGGAGGCACTGCCCCATTTTCTCAAGACAGATGTATTGCATCTTGAAAGAGCTTCAGCAATCGCCCAGATAAT
TTTTGATGAGTCTGTTAGTCCTCAGATACTACCCTTGCATTCGGAGGTCTTTGTCAGANTTTAGCTGAAATAAGCAATTG
CACCGTAGTTTAATTGCTGCTCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis