Browse Element(s) Details


OsAffx.11919.1.S1_s_at

Description tigr:9630.m00583
TID=OsAffx.11919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein T1F9.16 (imported) - Arabidopsis thaliana, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0653011/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed
LOC_Os02g06510OsAffx.11918.1.S1_s_at11/112+3251639..3252390myosin heavy chain, putative, expressed
LOC_Os02g06520Os.18079.1.S1_at11/112+3254923..3256937F-box domain containing protein, expressed
LOC_Os02g06530OsAffx.11919.1.S1_s_at11/112+3263666..3265602Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os02g06540Os.50048.1.S1_at11/112+3266009..3268698Sugar carrier protein C, putative, expressed
LOC_Os02g06550NANA2+3270601..3271272retrotransposon, putative, centromere-specific
LOC_Os02g06560NANA2+3279685..3279951expressed protein
LOC_Os02g06570Os.27081.1.A1_at11/112+3283260..3286364CBL-interacting serine/threonine-protein kinase 15, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11919.1.S1_s_at--983--6651Chr02:3264911..3264935 (25 bp)
GTTGACTATGCTGTCCTGGAATGCA
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--1012--3731Chr02:3264938..3264962 (25 bp)
CTCAACATTCTGGTACGGCTAACGA
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--350--1991Chr02:3265010..3265034 (25 bp)
ACTGCCCTGGTAAGCTCACTTGGAG
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--1112--5851Chr02:3265032..3265158 (25 bp)
GAGCCAAATCTTGTCAGTCGCTTGA
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--473--5311Chr02:3265183..3265207 (25 bp)
GAAGGATTTGGCCATTTCTTGCCTC
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--190--8971Chr02:3265272..3265296 (25 bp)
TGAAAGGACTCGCAGACTCCGGTGA
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--594--5931Chr02:3265357..3265381 (25 bp)
GAGAATCCGGATCACATGACTTCCT
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--242--6391Chr02:3265396..3265420 (25 bp)
GATCGCTCTTCAGTTTTGAACCACA
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--703--7531Chr02:3265452..3265476 (25 bp)
GTGGCTGCGTGCTGTTCATAGTTCC
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--502--291Chr02:3265469..3265493 (25 bp)
ATAGTTCCTCTTTGCCTGTTACATT
LOC_Os02g06530
OsAffx.11919.1.S1_s_at--675--9551Chr02:3265548..3265572 (25 bp)
TCTTTTGTGTAGATCGCACGGCCTA
LOC_Os02g06530
Target Sequence 
GTTGACTATGCTGTCCTGGAATGCACCCTCAACATTCTGGTACGGCTAACGAGGATCTCCGAGGAATACAGCAAGATGGT
TGGCAGGGCAGGGTTCATGACTGCCCTGGTAAGCTCACTTGGAGCCAAATCTTGTCAGTCGCTTGAGCACGGTGACGGCA
AGACGATGGCGAAGGATTTGGCCATTTCTTGCCTCGTGTCGTTGGCAGAGACCAGTGCTGGAAGGAAGAAGATCATATCG
TCTCAACATTTTGTCAGCTTGAAAGGACTCGCAGACTCCGGTGACCTTCCTGCCAAGAAGATCGTGAAGAAACTCTGTGC
TAACAAGTTGCAAAGCATTCTTACGAGAATCCGGATCACATGACTTCCTTCTCGCGTTTACCTGATCGCTCTTCAGTTTT
GAACCACAGAATTCATTGATTCAGCTTTTGCTACCCTGCGTGGCTGCGTGCTGTTCATAGTTCCTCTTTGCCTGTTACAT
TCTTGTTCAGTCCTCACTACTCATCCCTACAATTCTTTTGTACTATCCATGAAATTCTTTTGTGTAGATCGCACGGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11919.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis