Browse Element(s) Details


Os.27081.1.A1_at

Description gb:AK111660.1
DB_XREF= gi:37988323
TID=Os.27081.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151G22, full insert sequence.
FL= gb:AK111660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0657011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06530OsAffx.11919.1.S1_s_at11/112+3263666..3265602Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os02g06540Os.50048.1.S1_at11/112+3266009..3268698Sugar carrier protein C, putative, expressed
LOC_Os02g06550NANA2+3270601..3271272retrotransposon, putative, centromere-specific
LOC_Os02g06560NANA2+3279685..3279951expressed protein
LOC_Os02g06570Os.27081.1.A1_at11/112+3283260..3286364CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os02g06580Os.53389.1.S1_at11/112+3291233..3295424Formin Homology 2 Domain containing protein, expressed
LOC_Os02g06584Os.15553.1.S1_at11/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06584Os.25379.1.A1_at10/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27081.1.A1_at--236--7831Chr02:3283824..3283848 (25 bp)
GGTCAGCACCAGCAACCTGAGCAAT
LOC_Os02g06570
Os.27081.1.A1_at--960--5051Chr02:3283777..3283801 (25 bp)
GCAGCAGCCGTCACGTTTACCATCA
LOC_Os02g06570
Os.27081.1.A1_at--328--6831Chr02:3283763..3283787 (25 bp)
GTTTACCATCACAGCAGCCACAGGG
LOC_Os02g06570
Os.27081.1.A1_at--198--3151Chr02:3283736..3283760 (25 bp)
AATTAATCCGCTACATTGCCGACAA
LOC_Os02g06570
Os.27081.1.A1_at--815--951Chr02:3283706..3283730 (25 bp)
AGGACAGGCTGCCAACGCAGTTGCC
LOC_Os02g06570
Os.27081.1.A1_at--317--4131Chr02:3283691..3283715 (25 bp)
CGCAGTTGCCGCCTGTAAAACATGT
LOC_Os02g06570
Os.27081.1.A1_at--44--351Chr02:3283634..3283658 (25 bp)
ATACAACTTCAGCTGCAGAGCTTGT
LOC_Os02g06570
Os.27081.1.A1_at--496--3411Chr02:3283619..3283643 (25 bp)
CAGAGCTTGTTCCATCAGAGGCCAG
LOC_Os02g06570
Os.27081.1.A1_at--40--6032Chr02:3283376..3283400 (25 bp)
GAGTTTGTTTCAGTGTAACCAACGA
LOC_Os02g06570
Os.27081.1.A1_at--1091--1691Chr02:3283359..3283383 (25 bp)
ACCAACGATGTTGGCCAGTCCAAAT
LOC_Os02g06570
Os.27081.1.A1_at--138--10351Chr02:3283329..3283353 (25 bp)
TTTTTGCATGCAACCGATACCATAT
LOC_Os02g06570
Target Sequence 
GGTCAGCACCAGCAACCTGAGCAATNTATGCAAGGAATGCAAGGAGAGCAGCAGCCGTCACGTTTACCATCACAGCAGCC
ACAGGGNTAATTAATCCGCTACATTGCCGACAAAAGCCAGGACAGGCTGCCAACGCAGTTGCCGCCTGTAAAACATGTGA
CCAGTTGCAAATACCACGACCAGGTTTACAATACAACTTCAGCTGCAGAGCTTGTTCCATCAGAGGCCAGAGTCACAACT
TGTTCACATACATTGGATCGTTGTTCAGGTTTACCCTGTTCTAGTTTCTCCATTTCGTACCATTTGGCTTAATTTTTTTG
TTCCCTAGCTTCTTTACATTTCAGTATTTCTTCTGATAATTGTATATTCCATTTTTACTAAGGATACAAAGTATATATGA
GTCAATTTTGNANCATGTATATATGAGTCAAGCAACTGTGCNCTACAGGAGTTTGTTTCAGTGTAACCAACGATGTTGGC
CAGTCCAAATGTAAATTTTTGCATGCAACCGATACCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27081.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis