Browse Element(s) Details


Os.15553.1.S1_at

Description gb:AK122103.1
DB_XREF= gi:37991749
TID=Os.15553.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15553 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125O22, full insert sequence.
FL= gb:AK065198.1 gb:AK122103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0658411/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06560NANA2+3279685..3279951expressed protein
LOC_Os02g06570Os.27081.1.A1_at11/112+3283260..3286364CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os02g06580Os.53389.1.S1_at11/112+3291233..3295424Formin Homology 2 Domain containing protein, expressed
LOC_Os02g06584Os.15553.1.S1_at11/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06584Os.25379.1.A1_at10/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15553.1.S1_at--42--1571Chr02:3302702..3302726 (25 bp)
AGCTAGGAGCCAACATTTTCACAGA
LOC_Os02g06584
Os.15553.1.S1_at--19--8011Chr02:3303562..3303586 (25 bp)
GGATGGCCTCGTTTCTAGACAAGAG
LOC_Os02g06584
Os.15553.1.S1_at--928--2211Chr02:3303580..3303604 (25 bp)
ACAAGAGGCCTCTGATGAAGCAATG
LOC_Os02g06584
Os.15553.1.S1_at--123--871Chr02:3303602..3303626 (25 bp)
ATGGCGAGATTAGCATCTTCCCCAG
LOC_Os02g06584
Os.15553.1.S1_at--76--3651Chr02:3303618..3303642 (25 bp)
CTTCCCCAGCTCCTTATAATTAGTA
LOC_Os02g06584
Os.15553.1.S1_at--970--3551Chr02:3303650..3303674 (25 bp)
CATCTTGGTGTACAAAGTGCTATCT
LOC_Os02g06584
Os.15553.1.S1_at--937--6931Chr02:3303719..3303743 (25 bp)
GTAGTAACATCCTTGGCGCTGAGAC
LOC_Os02g06584
Os.15553.1.S1_at--434--4131Chr02:3303735..3303759 (25 bp)
CGCTGAGACAGCCTTAGTCAACTAT
LOC_Os02g06584
Os.15553.1.S1_at--522--7091Chr02:3303751..3303775 (25 bp)
GTCAACTATGTGGAGCAGCCGTATA
LOC_Os02g06584
Os.15553.1.S1_at--204--6871Chr02:3303796..3303820 (25 bp)
GTTTGGCTAAGCTAATGACGTATGG
LOC_Os02g06584
Os.15553.1.S1_at--381--691Chr02:3303810..3303834 (25 bp)
ATGACGTATGGTATGTGCGCTCCTT
LOC_Os02g06584
Target Sequence 
AGCTAGGAGCCAACATTTTCACAGAAAAGGTCAAAGGTTCTCCCGTCAGACATGTTTTGCCCTCCACTGGCATGGCTGCT
CATGCTATTGATGATCTCAACGAAGCTATTGAACTGGAGGNACAGACATGAATCCATAGACGCATTACTAGAAAATGATG
CTGATGACAAAACTAGATCACCTGCTATTCCCCTGCAGCCACCACCAGTGGTACAGAATGCTTATGAGCAGTATGAGGGT
GATGACGAGGAAGTCGATGTGGAATAAGTGGATGGCCTCGTTTCTAGACAAGAGGCCTCTGATGAAGCAATGGCGAGATT
AGCATCTTCCCCAGCTCCTTATAATTAGTACTATTAGCATCTTGGTGTACAAAGTGCTATCTATTTGACNTTGGGAATTC
AGCTTATATTTATCAAGAATCCTTTTGTAGTAACATCCTTGGCGCTGAGACAGCCTTAGTCAACTATGTGGAGCAGCCGT
ATAAATANNNNANANANNNTCTGGTTTGGCTAAGCTAATGACGTATGGTATGTGCGCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis