Browse Element(s) Details


Os.53125.1.S1_at

Description gb:AK070938.1
DB_XREF= gi:32980961
TID=Os.53125.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066D07, full insert sequence.
FL= gb:AK070938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0658810/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06570Os.27081.1.A1_at11/112+3283260..3286364CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os02g06580Os.53389.1.S1_at11/112+3291233..3295424Formin Homology 2 Domain containing protein, expressed
LOC_Os02g06584Os.15553.1.S1_at11/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06584Os.25379.1.A1_at10/112+3297228..3304374Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53125.1.S1_at--599--8971Chr02:3312666..3312690 (25 bp)
TGAACCCAGTCATTTTGCCTTTAAT
LOC_Os02g06588
Os.53125.1.S1_at--503--9031Chr02:3312813..3312837 (25 bp)
TGCACTTGCTGAGCTCATTTTTAGT
LOC_Os02g06588
Os.53125.1.S1_at--863--10311Chr02:3312832..3312856 (25 bp)
TTTAGTTGTGTTGGCCGCAAACCTG
LOC_Os02g06588
Os.53125.1.S1_at--802--4411Chr02:3313010..3313034 (25 bp)
GCCAGATGACTTCCGGTGGTGAATC
LOC_Os02g06588
Os.53125.1.S1_at--923--791Chr02:3313134..3313158 (25 bp)
ATGGGATTGCCTTACGGAGTTTCTT
LOC_Os02g06588
Os.53125.1.S1_at--918--6051Chr02:3313150..3313174 (25 bp)
GAGTTTCTTAAACCCGTCAAGACTG
LOC_Os02g06588
Os.53125.1.S1_at--896--2211NONE
ACAATGAACCGCAGTCCCTTATAAA
NONE
Os.53125.1.S1_at--692--9731Chr02:3313257..3313485 (25 bp)
TAATATCCAGGTTGTTCGTTCGGTT
LOC_Os02g06588
Os.53125.1.S1_at--1081--6711Chr02:3313478..3313502 (25 bp)
GTTCGGTTACACCTCATTTGGCTGA
LOC_Os02g06588
Os.53125.1.S1_at--367--10231Chr02:3313494..3313518 (25 bp)
TTTGGCTGAGCCCTTGAGGCCTCAA
LOC_Os02g06588
Os.53125.1.S1_at--994--6211Chr02:3313509..3313533 (25 bp)
GAGGCCTCAATTGCTAAGTCTCCTT
LOC_Os02g06588
Target Sequence 
TGAACCCAGTCATTTTGCCTTTAATGGCTGCTGTAAAAAGGGAACAGGAGGAAATACTTCAGGACAAAGCTGCAGATGCA
CTTGCTGAGCTCATTTTTAGTTGTGTTGGCCGCAAACCTGGCCCAAACGACAAACTAACAAAGAACCTCTGCACGTTAAC
ATGCACTGATGCAAGTGAGACACCTCAAGCTGCAGTTATAAACTCAATTCAGGTTATTGAGGACCAAAACTTGCTGTCGA
TTGGTAAGCGTTTTAGCAATCACAAATCCAGGGGCCAGATGACTTCCGGTGGTGAATCGAAGTCGGAGGGTTTTATAAGC
CGGCGTGGATCGGAGTTGGCTTTTAAGCATCTTTGTGAGAAATTTGGAGCATCCTTATTTGAAANGCTTCCCAAGTTATG
GGATTGCCTTACGGAGTTTCTTAAACCCGTCAAGACTGGAGATGATCTTATGAAAGAAGATCCAAGTATTGCGCAGTTAG
GAAGATCTTGTGAGGACAATGAACCGCAGTCCCTTATAAATAATATCCAGGTTGTTCGTTCGGTTACACCTCATTTGGCT
GAGCCCTTGAGGCCTCAATTGCTAAGTCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis